Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 AC117489.1-201ENST00000625169 3217 ntBASIC10.61□□□□□ -0.71
LINC00643Q86TS7 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 CYP20A1-201ENST00000356079 1949 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 GMPPB-203ENST00000480687 6108 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 LSM4-201ENST00000252816 986 ntTSL 2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 LHPP-203ENST00000392757 840 ntTSL 3 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 CCDC92B-201ENST00000575506 885 ntBASIC10.61□□□□□ -0.71
LINC00643Q86TS7 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 ADAMTS5-201ENST00000284987 9056 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 PHF14-201ENST00000403050 4276 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 SUSD5-201ENST00000309558 5008 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 COL6A3-202ENST00000347401 8625 ntTSL 5 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 POLL-205ENST00000370169 2360 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 COL6A3-209ENST00000472056 8628 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 CILP2-202ENST00000586018 4234 ntAPPRIS ALT1 TSL 2 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 PIGS-203ENST00000395346 2815 ntTSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC10.61□□□□□ -0.71
LINC00643Q86TS7 BMT2-201ENST00000297145 3981 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 DDX31-204ENST00000372159 4577 ntAPPRIS P2 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 GOLGA2P7-207ENST00000559668 4253 ntTSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 AL109954.1-202ENST00000564051 2148 ntBASIC10.6□□□□□ -0.71
LINC00643Q86TS7 ATP8B3-201ENST00000310127 5095 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 PML-208ENST00000436891 3010 ntAPPRIS ALT2 TSL 5 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 UHRF1BP1L-201ENST00000279907 5168 ntAPPRIS P4 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 THTPA-201ENST00000288014 2860 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 USP19-202ENST00000398888 4559 ntAPPRIS P3 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 TCP11-209ENST00000444780 1841 ntAPPRIS ALT2 TSL 2 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 ARMC5-202ENST00000408912 3626 ntAPPRIS ALT2 TSL 2 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 AL390755.1-201ENST00000623716 2027 ntBASIC10.6□□□□□ -0.71
LINC00643Q86TS7 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 MCM9-202ENST00000316316 5101 ntAPPRIS P1 TSL 5 BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC10.6□□□□□ -0.71
LINC00643Q86TS7 HECTD1-203ENST00000553700 9080 ntAPPRIS P1 TSL 5 BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC10.59□□□□□ -0.71
LINC00643Q86TS7 RNF126P1-201ENST00000567452 1320 ntBASIC10.59□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms