Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VPS53Q5VIR6 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 PENK-208ENST00000523051 772 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 LITAF-211ENST00000572255 516 ntTSL 4 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 PRKN-208ENST00000610470 531 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 PRKN-209ENST00000612485 225 ntTSL 5 BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 AC117500.6-201ENST00000624871 588 ntBASIC20.59■□□□□ 0.89
VPS53Q5VIR6 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS53Q5VIR6 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 HNRNPRP1-201ENST00000453465 1695 ntBASIC20.58■□□□□ 0.89
VPS53Q5VIR6 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC20.58■□□□□ 0.89
VPS53Q5VIR6 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 AC006557.2-201ENST00000592985 1240 ntBASIC20.58■□□□□ 0.89
VPS53Q5VIR6 AL356488.2-201ENST00000602755 427 ntBASIC20.58■□□□□ 0.89
VPS53Q5VIR6 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS53Q5VIR6 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VPS53Q5VIR6 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS53Q5VIR6 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC20.58■□□□□ 0.88
VPS53Q5VIR6 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.58■□□□□ 0.88
VPS53Q5VIR6 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VPS53Q5VIR6 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS53Q5VIR6 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC20.58■□□□□ 0.88
VPS53Q5VIR6 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VPS53Q5VIR6 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC20.58■□□□□ 0.88
VPS53Q5VIR6 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 GPR89P-201ENST00000407924 1495 ntBASIC20.57■□□□□ 0.88
VPS53Q5VIR6 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
VPS53Q5VIR6 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms