Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AC015911.4-201ENST00000588022 1070 ntBASIC13.92□□□□□ -0.18
LMO4P61968 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC13.92□□□□□ -0.18
LMO4P61968 LINC02084-201ENST00000606069 1096 ntBASIC13.92□□□□□ -0.18
LMO4P61968 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMO4P61968 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMO4P61968 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC13.92□□□□□ -0.18
LMO4P61968 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LMO4P61968 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LMO4P61968 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
LMO4P61968 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
LMO4P61968 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMO4P61968 LINC02012-201ENST00000608206 1725 ntBASIC13.92□□□□□ -0.18
LMO4P61968 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC13.92□□□□□ -0.18
LMO4P61968 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMO4P61968 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMO4P61968 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
LMO4P61968 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC13.92□□□□□ -0.18
LMO4P61968 AC068880.1-201ENST00000507289 2297 ntBASIC13.92□□□□□ -0.18
LMO4P61968 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 BSG-215ENST00000618006 1329 ntTSL 2 BASIC13.91□□□□□ -0.18
LMO4P61968 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
LMO4P61968 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC13.91□□□□□ -0.18
LMO4P61968 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
LMO4P61968 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
LMO4P61968 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
LMO4P61968 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC13.91□□□□□ -0.18
LMO4P61968 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
LMO4P61968 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC13.91□□□□□ -0.18
LMO4P61968 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC13.91□□□□□ -0.18
LMO4P61968 HLA-DRB6-201ENST00000411500 1235 ntBASIC13.91□□□□□ -0.18
LMO4P61968 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 GPS2P2-201ENST00000430745 888 ntBASIC13.91□□□□□ -0.18
LMO4P61968 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
LMO4P61968 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC13.91□□□□□ -0.18
LMO4P61968 IGHV3-62-201ENST00000520057 340 ntBASIC13.91□□□□□ -0.18
LMO4P61968 CYP2A7P1-201ENST00000595391 815 ntBASIC13.91□□□□□ -0.18
LMO4P61968 AP001059.3-201ENST00000619053 235 ntBASIC13.91□□□□□ -0.18
LMO4P61968 Z92544.3-201ENST00000624747 417 ntBASIC13.91□□□□□ -0.18
LMO4P61968 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC13.91□□□□□ -0.18
LMO4P61968 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC13.91□□□□□ -0.18
LMO4P61968 AC084121.4-201ENST00000641598 221 ntBASIC13.91□□□□□ -0.18
LMO4P61968 AF228730.8-201ENST00000642140 221 ntBASIC13.91□□□□□ -0.18
LMO4P61968 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC13.91□□□□□ -0.18
LMO4P61968 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC13.91□□□□□ -0.18
LMO4P61968 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
LMO4P61968 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC13.9□□□□□ -0.18
LMO4P61968 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
LMO4P61968 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
LMO4P61968 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
LMO4P61968 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 RPL30-202ENST00000396070 440 ntTSL 2 BASIC13.9□□□□□ -0.18
LMO4P61968 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
LMO4P61968 FAM86GP-201ENST00000448322 971 ntBASIC13.9□□□□□ -0.18
LMO4P61968 AL807752.3-201ENST00000456356 748 ntTSL 2 BASIC13.9□□□□□ -0.18
LMO4P61968 LAMTOR4-206ENST00000473459 720 ntTSL 2 BASIC13.9□□□□□ -0.18
LMO4P61968 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC13.9□□□□□ -0.18
LMO4P61968 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 AC124947.2-201ENST00000547118 1133 ntBASIC13.9□□□□□ -0.18
LMO4P61968 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC13.9□□□□□ -0.18
LMO4P61968 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
LMO4P61968 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC13.9□□□□□ -0.18
LMO4P61968 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC13.9□□□□□ -0.18
LMO4P61968 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC13.9□□□□□ -0.18
LMO4P61968 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC13.9□□□□□ -0.18
LMO4P61968 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC13.9□□□□□ -0.18
LMO4P61968 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
LMO4P61968 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
LMO4P61968 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC13.9□□□□□ -0.18
LMO4P61968 AC067852.2-201ENST00000590513 2313 ntBASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms