Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.07■□□□□ 0
SOX2P48431 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC15.07■□□□□ 0
SOX2P48431 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 HBZP1-201ENST00000354915 429 ntBASIC15.07■□□□□ 0
SOX2P48431 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 AL596275.1-201ENST00000423464 877 ntBASIC15.07■□□□□ 0
SOX2P48431 FOXP3-205ENST00000518685 1213 ntTSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.07■□□□□ 0
SOX2P48431 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC15.07■□□□□ 0
SOX2P48431 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC15.07■□□□□ 0
SOX2P48431 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 UBC-206ENST00000538617 1303 ntTSL 5 BASIC15.07■□□□□ 0
SOX2P48431 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
SOX2P48431 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
SOX2P48431 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.07■□□□□ 0
SOX2P48431 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC15.07■□□□□ 0
SOX2P48431 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 AL162727.3-201ENST00000635661 2787 ntBASIC15.07■□□□□ 0
SOX2P48431 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.07■□□□□ 0
SOX2P48431 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.06■□□□□ 0
SOX2P48431 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
SOX2P48431 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.06■□□□□ 0
SOX2P48431 AC092364.2-201ENST00000596710 2692 ntBASIC15.06■□□□□ 0
SOX2P48431 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
SOX2P48431 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.06■□□□□ 0
SOX2P48431 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 BX664615.1-201ENST00000443558 458 ntBASIC15.06■□□□□ 0
SOX2P48431 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC15.06■□□□□ 0
SOX2P48431 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC15.06■□□□□ 0
SOX2P48431 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 AC111152.3-201ENST00000569699 673 ntBASIC15.06■□□□□ 0
SOX2P48431 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC15.06■□□□□ 0
SOX2P48431 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC15.06■□□□□ 0
SOX2P48431 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 PCDHB17P-201ENST00000539533 2393 ntBASIC15.06■□□□□ 0
SOX2P48431 IFNLR1-205ENST00000374421 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC15.06■□□□□ 0
SOX2P48431 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC15.06■□□□□ 0
SOX2P48431 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
SOX2P48431 AC132872.4-202ENST00000622924 2756 ntBASIC15.06■□□□□ 0
SOX2P48431 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC15.06■□□□□ 0
SOX2P48431 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.06■□□□□ 0
SOX2P48431 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC15.05■□□□□ 0
SOX2P48431 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ 0
SOX2P48431 AC026691.1-201ENST00000602502 2017 ntBASIC15.05■□□□□ 0
SOX2P48431 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
SOX2P48431 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.05■□□□□ 0
SOX2P48431 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SOX2P48431 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SOX2P48431 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SOX2P48431 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC15.05■□□□□ 0
SOX2P48431 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.05■□□□□ 0
SOX2P48431 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
SOX2P48431 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
SOX2P48431 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
SOX2P48431 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
SOX2P48431 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
SOX2P48431 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
SOX2P48431 AC117947.1-201ENST00000427448 529 ntBASIC15.05■□□□□ -0
SOX2P48431 AL137013.1-201ENST00000432946 1228 ntBASIC15.05■□□□□ -0
SOX2P48431 AC112907.2-201ENST00000448639 330 ntBASIC15.05■□□□□ -0
SOX2P48431 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
SOX2P48431 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC15.05■□□□□ -0
SOX2P48431 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SOX2P48431 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SOX2P48431 MTG1-201ENST00000317502 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SOX2P48431 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC15.05■□□□□ -0
SOX2P48431 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
SOX2P48431 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
SOX2P48431 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
SOX2P48431 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC15.05■□□□□ -0
SOX2P48431 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC15.05■□□□□ -0
SOX2P48431 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.05■□□□□ -0
SOX2P48431 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC15.05■□□□□ -0
SOX2P48431 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC15.05■□□□□ -0
SOX2P48431 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.05■□□□□ -0
SOX2P48431 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 43.8 ms