Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCA1P28370 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCA1P28370 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCA1P28370 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.47■□□□□ 0.71
SMARCA1P28370 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.47■□□□□ 0.71
SMARCA1P28370 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC19.47■□□□□ 0.71
SMARCA1P28370 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC19.47■□□□□ 0.71
SMARCA1P28370 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC19.47■□□□□ 0.71
SMARCA1P28370 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC19.47■□□□□ 0.71
SMARCA1P28370 AP002472.1-201ENST00000577490 586 ntBASIC19.47■□□□□ 0.71
SMARCA1P28370 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.47■□□□□ 0.71
SMARCA1P28370 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC19.47■□□□□ 0.71
SMARCA1P28370 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCA1P28370 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCA1P28370 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC19.47■□□□□ 0.71
SMARCA1P28370 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCA1P28370 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCA1P28370 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC19.47■□□□□ 0.71
SMARCA1P28370 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC19.47■□□□□ 0.71
SMARCA1P28370 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCA1P28370 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SMARCA1P28370 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
SMARCA1P28370 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC19.46■□□□□ 0.71
SMARCA1P28370 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC19.46■□□□□ 0.71
SMARCA1P28370 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.46■□□□□ 0.71
SMARCA1P28370 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.46■□□□□ 0.71
SMARCA1P28370 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC19.46■□□□□ 0.71
SMARCA1P28370 BX842568.4-201ENST00000421222 227 ntBASIC19.46■□□□□ 0.71
SMARCA1P28370 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.46■□□□□ 0.71
SMARCA1P28370 MKNK2P1-201ENST00000437526 628 ntBASIC19.46■□□□□ 0.71
SMARCA1P28370 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC19.46■□□□□ 0.71
SMARCA1P28370 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.46■□□□□ 0.71
SMARCA1P28370 AC109635.5-201ENST00000533593 962 ntBASIC19.46■□□□□ 0.71
SMARCA1P28370 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 SIGLEC29P-201ENST00000599873 1114 ntBASIC19.46■□□□□ 0.71
SMARCA1P28370 AC068137.2-201ENST00000605408 478 ntBASIC19.46■□□□□ 0.71
SMARCA1P28370 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.46■□□□□ 0.71
SMARCA1P28370 C20orf181-201ENST00000623918 480 ntBASIC19.46■□□□□ 0.71
SMARCA1P28370 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SMARCA1P28370 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SMARCA1P28370 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SMARCA1P28370 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.45■□□□□ 0.7
SMARCA1P28370 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCA1P28370 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCA1P28370 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.45■□□□□ 0.7
SMARCA1P28370 AL645728.1-201ENST00000366221 2101 ntBASIC19.45■□□□□ 0.7
SMARCA1P28370 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.45■□□□□ 0.7
SMARCA1P28370 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SMARCA1P28370 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCA1P28370 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SMARCA1P28370 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCA1P28370 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCA1P28370 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
SMARCA1P28370 PMS2P4-201ENST00000412466 1052 ntBASIC19.45■□□□□ 0.7
SMARCA1P28370 RPP21-221ENST00000428040 594 ntTSL 2 BASIC19.45■□□□□ 0.7
SMARCA1P28370 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCA1P28370 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.45■□□□□ 0.7
SMARCA1P28370 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.45■□□□□ 0.7
SMARCA1P28370 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC19.45■□□□□ 0.7
SMARCA1P28370 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.45■□□□□ 0.7
SMARCA1P28370 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCA1P28370 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCA1P28370 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SMARCA1P28370 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCA1P28370 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCA1P28370 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.45■□□□□ 0.7
SMARCA1P28370 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SMARCA1P28370 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCA1P28370 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
SMARCA1P28370 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SMARCA1P28370 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
SMARCA1P28370 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCA1P28370 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCA1P28370 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.44■□□□□ 0.7
SMARCA1P28370 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCA1P28370 AC105020.1-201ENST00000435356 2205 ntBASIC19.44■□□□□ 0.7
SMARCA1P28370 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCA1P28370 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCA1P28370 AL391256.1-201ENST00000443260 1855 ntBASIC19.44■□□□□ 0.7
SMARCA1P28370 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCA1P28370 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SMARCA1P28370 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms