Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
FREM3P0C091 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
FREM3P0C091 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
FREM3P0C091 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.46■□□□□ 0.07
FREM3P0C091 MIR1233-2-201ENST00000408138 82 ntBASIC15.46■□□□□ 0.07
FREM3P0C091 MIR1233-1-201ENST00000408722 82 ntBASIC15.46■□□□□ 0.07
FREM3P0C091 HTR5BP-201ENST00000430851 1154 ntBASIC15.46■□□□□ 0.07
FREM3P0C091 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.46■□□□□ 0.07
FREM3P0C091 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC15.46■□□□□ 0.07
FREM3P0C091 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.46■□□□□ 0.07
FREM3P0C091 MTDHP5-201ENST00000598980 586 ntBASIC15.46■□□□□ 0.07
FREM3P0C091 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
FREM3P0C091 FBXO4-202ENST00000296812 1731 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
FREM3P0C091 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
FREM3P0C091 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
FREM3P0C091 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.46■□□□□ 0.06
FREM3P0C091 CRCP-205ENST00000431089 942 ntTSL 2 BASIC15.46■□□□□ 0.06
FREM3P0C091 AL513480.1-201ENST00000451731 511 ntBASIC15.46■□□□□ 0.06
FREM3P0C091 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC15.46■□□□□ 0.06
FREM3P0C091 AC005593.1-201ENST00000624894 515 ntBASIC15.46■□□□□ 0.06
FREM3P0C091 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
FREM3P0C091 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
FREM3P0C091 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
FREM3P0C091 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC15.46■□□□□ 0.06
FREM3P0C091 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC15.46■□□□□ 0.06
FREM3P0C091 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
FREM3P0C091 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.46■□□□□ 0.06
FREM3P0C091 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
FREM3P0C091 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC15.45■□□□□ 0.06
FREM3P0C091 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.45■□□□□ 0.06
FREM3P0C091 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC15.45■□□□□ 0.06
FREM3P0C091 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.45■□□□□ 0.06
FREM3P0C091 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC15.45■□□□□ 0.06
FREM3P0C091 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.45■□□□□ 0.06
FREM3P0C091 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.45■□□□□ 0.06
FREM3P0C091 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.45■□□□□ 0.06
FREM3P0C091 MMP17-203ENST00000535004 719 ntTSL 3 BASIC15.45■□□□□ 0.06
FREM3P0C091 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.45■□□□□ 0.06
FREM3P0C091 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.45■□□□□ 0.06
FREM3P0C091 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.45■□□□□ 0.06
FREM3P0C091 AL513190.1-201ENST00000621254 727 ntBASIC15.45■□□□□ 0.06
FREM3P0C091 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC15.45■□□□□ 0.06
FREM3P0C091 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.45■□□□□ 0.06
FREM3P0C091 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 RHBDF1P1-201ENST00000427504 1941 ntBASIC15.45■□□□□ 0.06
FREM3P0C091 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.45■□□□□ 0.06
FREM3P0C091 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
FREM3P0C091 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.45■□□□□ 0.06
FREM3P0C091 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
FREM3P0C091 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC15.45■□□□□ 0.06
FREM3P0C091 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC15.44■□□□□ 0.06
FREM3P0C091 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.44■□□□□ 0.06
FREM3P0C091 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.44■□□□□ 0.06
FREM3P0C091 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.44■□□□□ 0.06
FREM3P0C091 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.44■□□□□ 0.06
FREM3P0C091 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC15.44■□□□□ 0.06
FREM3P0C091 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC15.44■□□□□ 0.06
FREM3P0C091 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC15.44■□□□□ 0.06
FREM3P0C091 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC15.44■□□□□ 0.06
FREM3P0C091 AC011676.5-201ENST00000624864 2660 ntBASIC15.44■□□□□ 0.06
FREM3P0C091 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.44■□□□□ 0.06
FREM3P0C091 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.44■□□□□ 0.06
FREM3P0C091 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
FREM3P0C091 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC15.44■□□□□ 0.06
FREM3P0C091 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
FREM3P0C091 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
FREM3P0C091 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
FREM3P0C091 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms