Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC13.26□□□□□ -0.29
CXCL1P09341 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC13.26□□□□□ -0.29
CXCL1P09341 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 KRT18P23-201ENST00000435622 1283 ntBASIC13.26□□□□□ -0.29
CXCL1P09341 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 SPATA6L-207ENST00000475086 1444 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 EDNRA-206ENST00000511804 1569 ntTSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC13.26□□□□□ -0.29
CXCL1P09341 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC13.26□□□□□ -0.29
CXCL1P09341 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC13.26□□□□□ -0.29
CXCL1P09341 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC13.26□□□□□ -0.29
CXCL1P09341 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC13.26□□□□□ -0.29
CXCL1P09341 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 RPS15-203ENST00000586096 570 ntTSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC13.26□□□□□ -0.29
CXCL1P09341 AL024508.2-201ENST00000607749 1894 ntBASIC13.26□□□□□ -0.29
CXCL1P09341 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 AC132938.6-201ENST00000623828 1655 ntBASIC13.26□□□□□ -0.29
CXCL1P09341 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
CXCL1P09341 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC13.26□□□□□ -0.29
CXCL1P09341 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC13.26□□□□□ -0.29
CXCL1P09341 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
CXCL1P09341 AC010491.1-201ENST00000563101 2797 ntBASIC13.26□□□□□ -0.29
CXCL1P09341 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
CXCL1P09341 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC13.25□□□□□ -0.29
CXCL1P09341 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 SIGIRR-220ENST00000531205 1649 ntTSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CXCL1P09341 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CXCL1P09341 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC13.25□□□□□ -0.29
CXCL1P09341 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC13.25□□□□□ -0.29
CXCL1P09341 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC13.25□□□□□ -0.29
CXCL1P09341 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 WWOX-216ENST00000569818 525 ntBASIC13.25□□□□□ -0.29
CXCL1P09341 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC13.25□□□□□ -0.29
CXCL1P09341 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC13.25□□□□□ -0.29
CXCL1P09341 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 PPT1-215ENST00000641471 2368 ntBASIC13.25□□□□□ -0.29
CXCL1P09341 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
CXCL1P09341 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
CXCL1P09341 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
CXCL1P09341 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC13.25□□□□□ -0.29
CXCL1P09341 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 GSN-203ENST00000373808 2664 ntTSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CXCL1P09341 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC13.25□□□□□ -0.29
CXCL1P09341 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC13.25□□□□□ -0.29
CXCL1P09341 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CXCL1P09341 AC006538.1-201ENST00000567905 1585 ntBASIC13.24□□□□□ -0.29
CXCL1P09341 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.24□□□□□ -0.29
CXCL1P09341 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms