Protein–RNA interactions for Protein: P02458

COL2A1, Collagen alpha-1(II) chain, humanhuman

Predicted RBP Predictions only

Length 1,487 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1P02458 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC19.68■□□□□ 0.74
COL2A1P02458 AL139011.1-202ENST00000642063 584 ntBASIC19.68■□□□□ 0.74
COL2A1P02458 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL2A1P02458 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
COL2A1P02458 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL2A1P02458 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC19.68■□□□□ 0.74
COL2A1P02458 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL2A1P02458 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL2A1P02458 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL2A1P02458 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL2A1P02458 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
COL2A1P02458 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.68■□□□□ 0.74
COL2A1P02458 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
COL2A1P02458 AP3S2-216ENST00000617003 1561 ntBASIC19.68■□□□□ 0.74
COL2A1P02458 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC19.68■□□□□ 0.74
COL2A1P02458 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.68■□□□□ 0.74
COL2A1P02458 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL2A1P02458 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
COL2A1P02458 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL2A1P02458 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC19.67■□□□□ 0.74
COL2A1P02458 INGX-202ENST00000489074 768 ntBASIC19.67■□□□□ 0.74
COL2A1P02458 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC19.67■□□□□ 0.74
COL2A1P02458 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC19.67■□□□□ 0.74
COL2A1P02458 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.67■□□□□ 0.74
COL2A1P02458 MIR4453-201ENST00000584019 89 ntBASIC19.67■□□□□ 0.74
COL2A1P02458 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC19.67■□□□□ 0.74
COL2A1P02458 AC018529.1-201ENST00000613063 361 ntBASIC19.67■□□□□ 0.74
COL2A1P02458 SPDYE12P-201ENST00000618416 771 ntBASIC19.67■□□□□ 0.74
COL2A1P02458 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.67■□□□□ 0.74
COL2A1P02458 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC19.67■□□□□ 0.74
COL2A1P02458 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
COL2A1P02458 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.67■□□□□ 0.74
COL2A1P02458 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 AC067852.2-201ENST00000590513 2313 ntBASIC19.67■□□□□ 0.74
COL2A1P02458 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC19.67■□□□□ 0.74
COL2A1P02458 AC004890.2-204ENST00000481968 304 ntBASIC19.67■□□□□ 0.74
COL2A1P02458 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL2A1P02458 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC19.67■□□□□ 0.74
COL2A1P02458 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC19.67■□□□□ 0.74
COL2A1P02458 AC073592.8-201ENST00000624126 511 ntBASIC19.67■□□□□ 0.74
COL2A1P02458 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL2A1P02458 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC19.66■□□□□ 0.74
COL2A1P02458 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC19.66■□□□□ 0.74
COL2A1P02458 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC19.66■□□□□ 0.74
COL2A1P02458 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC19.66■□□□□ 0.74
COL2A1P02458 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL2A1P02458 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
COL2A1P02458 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC19.66■□□□□ 0.74
COL2A1P02458 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC19.66■□□□□ 0.74
COL2A1P02458 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.66■□□□□ 0.74
COL2A1P02458 AC073439.1-201ENST00000624121 1774 ntBASIC19.66■□□□□ 0.74
COL2A1P02458 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL2A1P02458 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL2A1P02458 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC19.66■□□□□ 0.74
COL2A1P02458 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL2A1P02458 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL2A1P02458 TSSK5P-201ENST00000423978 907 ntBASIC19.66■□□□□ 0.74
COL2A1P02458 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC19.66■□□□□ 0.74
COL2A1P02458 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC19.66■□□□□ 0.74
COL2A1P02458 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
COL2A1P02458 SATB1-217ENST00000493952 626 ntTSL 3 BASIC19.66■□□□□ 0.74
COL2A1P02458 IGHV3-42-201ENST00000520410 361 ntBASIC19.66■□□□□ 0.74
COL2A1P02458 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC19.66■□□□□ 0.74
COL2A1P02458 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC19.66■□□□□ 0.74
COL2A1P02458 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC19.66■□□□□ 0.74
COL2A1P02458 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC19.66■□□□□ 0.74
COL2A1P02458 RN7SL204P-201ENST00000582831 262 ntBASIC19.66■□□□□ 0.74
COL2A1P02458 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.66■□□□□ 0.74
COL2A1P02458 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC19.66■□□□□ 0.74
COL2A1P02458 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL2A1P02458 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC19.66■□□□□ 0.74
COL2A1P02458 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC19.66■□□□□ 0.74
COL2A1P02458 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL2A1P02458 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL2A1P02458 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL2A1P02458 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL2A1P02458 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
COL2A1P02458 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.65■□□□□ 0.74
COL2A1P02458 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL2A1P02458 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
COL2A1P02458 AC092053.1-201ENST00000605787 1936 ntBASIC19.65■□□□□ 0.74
COL2A1P02458 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC19.65■□□□□ 0.74
COL2A1P02458 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
COL2A1P02458 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL2A1P02458 AC236430.1-201ENST00000402231 743 ntBASIC19.65■□□□□ 0.74
COL2A1P02458 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC19.65■□□□□ 0.74
COL2A1P02458 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 57.3 ms