Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 MTMR3-202ENST00000333027 8906 ntTSL 5 BASIC13.78□□□□□ -0.2
HMGB3O15347 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC13.78□□□□□ -0.2
HMGB3O15347 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC13.78□□□□□ -0.2
HMGB3O15347 AC092068.3-201ENST00000587894 2016 ntBASIC13.78□□□□□ -0.2
HMGB3O15347 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
HMGB3O15347 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC13.78□□□□□ -0.2
HMGB3O15347 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 COL17A1-201ENST00000353479 5734 ntAPPRIS P2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC13.78□□□□□ -0.2
HMGB3O15347 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC13.78□□□□□ -0.2
HMGB3O15347 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC13.78□□□□□ -0.2
HMGB3O15347 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC13.78□□□□□ -0.2
HMGB3O15347 RPS15-203ENST00000586096 570 ntTSL 2 BASIC13.78□□□□□ -0.2
HMGB3O15347 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC13.78□□□□□ -0.2
HMGB3O15347 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 LINC00167-201ENST00000530583 1419 ntBASIC13.78□□□□□ -0.2
HMGB3O15347 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC13.78□□□□□ -0.2
HMGB3O15347 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC13.78□□□□□ -0.2
HMGB3O15347 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
HMGB3O15347 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC13.78□□□□□ -0.2
HMGB3O15347 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC13.78□□□□□ -0.2
HMGB3O15347 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC13.78□□□□□ -0.2
HMGB3O15347 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC13.78□□□□□ -0.2
HMGB3O15347 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13.78□□□□□ -0.2
HMGB3O15347 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC13.78□□□□□ -0.2
HMGB3O15347 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
HMGB3O15347 CNTNAP1-201ENST00000264638 5276 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HMGB3O15347 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC13.77□□□□□ -0.2
HMGB3O15347 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HMGB3O15347 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HMGB3O15347 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HMGB3O15347 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC13.77□□□□□ -0.2
HMGB3O15347 AL161772.1-201ENST00000610494 4412 ntBASIC13.77□□□□□ -0.2
HMGB3O15347 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
HMGB3O15347 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HMGB3O15347 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HMGB3O15347 BANP-201ENST00000286122 2368 ntTSL 5 BASIC13.77□□□□□ -0.21
HMGB3O15347 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HMGB3O15347 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC13.77□□□□□ -0.21
HMGB3O15347 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
HMGB3O15347 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
HMGB3O15347 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HMGB3O15347 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HMGB3O15347 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HMGB3O15347 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC13.77□□□□□ -0.21
HMGB3O15347 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
HMGB3O15347 MIEF2-202ENST00000395703 718 ntTSL 3 BASIC13.77□□□□□ -0.21
HMGB3O15347 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC13.77□□□□□ -0.21
HMGB3O15347 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
HMGB3O15347 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HMGB3O15347 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC13.77□□□□□ -0.21
HMGB3O15347 ZNF706-206ENST00000519744 785 ntTSL 3 BASIC13.77□□□□□ -0.21
HMGB3O15347 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC13.77□□□□□ -0.21
HMGB3O15347 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC13.77□□□□□ -0.21
HMGB3O15347 AC104390.1-201ENST00000555663 520 ntBASIC13.77□□□□□ -0.21
HMGB3O15347 AC142086.2-201ENST00000569753 217 ntBASIC13.77□□□□□ -0.21
HMGB3O15347 RN7SL471P-201ENST00000580476 299 ntBASIC13.77□□□□□ -0.21
HMGB3O15347 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC13.77□□□□□ -0.21
HMGB3O15347 CYGB-204ENST00000589342 815 ntTSL 3 BASIC13.77□□□□□ -0.21
HMGB3O15347 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HMGB3O15347 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC13.77□□□□□ -0.21
HMGB3O15347 DBET-201ENST00000630918 3363 ntBASIC13.77□□□□□ -0.21
HMGB3O15347 FLNA-203ENST00000369850 8382 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
HMGB3O15347 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HMGB3O15347 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
HMGB3O15347 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.77□□□□□ -0.21
HMGB3O15347 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
HMGB3O15347 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
HMGB3O15347 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
HMGB3O15347 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
HMGB3O15347 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
HMGB3O15347 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
HMGB3O15347 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms