Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
SMKR1H3BMG3 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 BSX-201ENST00000343035 830 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 PVRIG2P-201ENST00000435460 978 ntBASIC12.52□□□□□ -0.41
SMKR1H3BMG3 AC112698.1-201ENST00000510299 916 ntBASIC12.52□□□□□ -0.41
SMKR1H3BMG3 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 AC124947.2-201ENST00000547118 1133 ntBASIC12.52□□□□□ -0.41
SMKR1H3BMG3 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 AP005242.2-201ENST00000580065 1175 ntBASIC12.52□□□□□ -0.41
SMKR1H3BMG3 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 AL157888.1-201ENST00000631930 593 ntBASIC12.52□□□□□ -0.41
SMKR1H3BMG3 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 ARHGAP8-202ENST00000356099 1584 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC12.52□□□□□ -0.41
SMKR1H3BMG3 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 CCR12P-201ENST00000446203 998 ntBASIC12.51□□□□□ -0.41
SMKR1H3BMG3 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 STX3-203ENST00000529177 1571 ntTSL 2 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
SMKR1H3BMG3 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 AC007663.1-201ENST00000438948 1240 ntBASIC12.5□□□□□ -0.41
SMKR1H3BMG3 AC009947.2-201ENST00000444014 672 ntBASIC12.5□□□□□ -0.41
SMKR1H3BMG3 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
SMKR1H3BMG3 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms