Protein–RNA interactions for Protein: Q9Y3I0

RTCB, tRNA-splicing ligase RtcB homolog, humanhuman

Known RBP Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTCBQ9Y3I0 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
RTCBQ9Y3I0 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RTCBQ9Y3I0 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RTCBQ9Y3I0 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC21.31■■□□□ 1
RTCBQ9Y3I0 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC21.31■■□□□ 1
RTCBQ9Y3I0 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RTCBQ9Y3I0 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC21.31■■□□□ 1
RTCBQ9Y3I0 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RTCBQ9Y3I0 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
RTCBQ9Y3I0 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC21.31■■□□□ 1
RTCBQ9Y3I0 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC21.31■■□□□ 1
RTCBQ9Y3I0 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC21.31■■□□□ 1
RTCBQ9Y3I0 PMAIP1-202ENST00000316660 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RTCBQ9Y3I0 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
RTCBQ9Y3I0 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
RTCBQ9Y3I0 EGFEM1P-202ENST00000431685 1563 ntBASIC21.31■■□□□ 1
RTCBQ9Y3I0 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC21.3■■□□□ 1
RTCBQ9Y3I0 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC21.3■■□□□ 1
RTCBQ9Y3I0 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC21.3■■□□□ 1
RTCBQ9Y3I0 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC21.3■■□□□ 1
RTCBQ9Y3I0 FGFR3-202ENST00000340107 4293 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
RTCBQ9Y3I0 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC21.3■■□□□ 1
RTCBQ9Y3I0 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC21.3■■□□□ 1
RTCBQ9Y3I0 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC21.3■■□□□ 1
RTCBQ9Y3I0 CDK2AP2P3-201ENST00000422476 372 ntBASIC21.3■■□□□ 1
RTCBQ9Y3I0 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC21.3■■□□□ 1
RTCBQ9Y3I0 KRT18P34-201ENST00000488218 1270 ntBASIC21.3■■□□□ 1
RTCBQ9Y3I0 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC21.3■■□□□ 1
RTCBQ9Y3I0 AC009407.1-201ENST00000568958 598 ntBASIC21.3■■□□□ 1
RTCBQ9Y3I0 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC21.3■■□□□ 1
RTCBQ9Y3I0 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC21.3■■□□□ 1
RTCBQ9Y3I0 AL035456.1-201ENST00000456064 1369 ntBASIC21.3■■□□□ 1
RTCBQ9Y3I0 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC21.3■■□□□ 1
RTCBQ9Y3I0 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC21.3■■□□□ 1
RTCBQ9Y3I0 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC21.3■■□□□ 1
RTCBQ9Y3I0 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RTCBQ9Y3I0 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RTCBQ9Y3I0 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC21.3■■□□□ 1
RTCBQ9Y3I0 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC21.3■■□□□ 1
RTCBQ9Y3I0 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC21.3■■□□□ 1
RTCBQ9Y3I0 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
RTCBQ9Y3I0 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
RTCBQ9Y3I0 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RTCBQ9Y3I0 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 FOS-208ENST00000555686 1496 ntTSL 2 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 STOM-203ENST00000538954 1257 ntTSL 5 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 AC008738.7-201ENST00000609744 511 ntBASIC21.29■■□□□ 1
RTCBQ9Y3I0 RAB34-223ENST00000636154 730 ntTSL 2 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 IDUA-210ENST00000514224 2130 ntTSL 2 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 SLC9A3P2-201ENST00000447821 2021 ntBASIC21.29■■□□□ 1
RTCBQ9Y3I0 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
RTCBQ9Y3I0 AC087499.5-201ENST00000452760 1342 ntBASIC21.29■■□□□ 1
RTCBQ9Y3I0 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
RTCBQ9Y3I0 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC21.28■■□□□ 1
RTCBQ9Y3I0 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC21.28■■□□□ 1
RTCBQ9Y3I0 BX323043.1-201ENST00000641006 1765 ntBASIC21.28■■□□□ 1
RTCBQ9Y3I0 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
RTCBQ9Y3I0 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC21.28■■□□□ 1
RTCBQ9Y3I0 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RTCBQ9Y3I0 AC007541.1-201ENST00000570282 1469 ntBASIC21.28■■□□□ 1
RTCBQ9Y3I0 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC21.28■■□□□ 1
RTCBQ9Y3I0 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC21.28■■□□□ 1
RTCBQ9Y3I0 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RTCBQ9Y3I0 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC21.28■■□□□ 1
RTCBQ9Y3I0 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
RTCBQ9Y3I0 STARD13-205ENST00000439831 945 ntTSL 2 BASIC21.28■■□□□ 1
RTCBQ9Y3I0 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC21.28■■□□□ 1
RTCBQ9Y3I0 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC21.28■■□□□ 1
RTCBQ9Y3I0 AL132655.2-201ENST00000596276 594 ntBASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms