Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC21.66■■□□□ 1.06
SCN11AQ9UI33 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 AC073439.1-201ENST00000624121 1774 ntBASIC21.65■■□□□ 1.06
SCN11AQ9UI33 AL080243.2-201ENST00000418783 582 ntBASIC21.65■■□□□ 1.06
SCN11AQ9UI33 BASP1P1-201ENST00000430708 665 ntBASIC21.65■■□□□ 1.06
SCN11AQ9UI33 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SCN11AQ9UI33 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
SCN11AQ9UI33 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SCN11AQ9UI33 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC21.64■■□□□ 1.06
SCN11AQ9UI33 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.64■■□□□ 1.06
SCN11AQ9UI33 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SCN11AQ9UI33 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SCN11AQ9UI33 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.06
SCN11AQ9UI33 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
SCN11AQ9UI33 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
SCN11AQ9UI33 AC004840.1-201ENST00000636359 365 ntBASIC21.64■■□□□ 1.06
SCN11AQ9UI33 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
SCN11AQ9UI33 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
SCN11AQ9UI33 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC21.64■■□□□ 1.06
SCN11AQ9UI33 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 PNKD-204ENST00000436005 978 ntTSL 5 BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 LY6E-204ENST00000519546 971 ntTSL 2 BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 RBM7-207ENST00000544582 692 ntTSL 3 BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC21.64■■□□□ 1.05
SCN11AQ9UI33 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 OARD1-208ENST00000469104 704 ntTSL 2 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 AC239800.4-201ENST00000603712 296 ntBASIC21.63■■□□□ 1.05
SCN11AQ9UI33 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 AL671710.1-201ENST00000610245 2349 ntBASIC21.63■■□□□ 1.05
SCN11AQ9UI33 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC21.63■■□□□ 1.05
SCN11AQ9UI33 AC022144.1-201ENST00000602255 1580 ntBASIC21.63■■□□□ 1.05
SCN11AQ9UI33 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
SCN11AQ9UI33 AC092053.1-201ENST00000605787 1936 ntBASIC21.62■■□□□ 1.05
SCN11AQ9UI33 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.62■■□□□ 1.05
SCN11AQ9UI33 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC21.62■■□□□ 1.05
SCN11AQ9UI33 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC21.62■■□□□ 1.05
SCN11AQ9UI33 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
SCN11AQ9UI33 HLA-H-201ENST00000383620 1096 ntBASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms