Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 BET1L-206ENST00000486280 665 ntTSL 3 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMA1Q9UHB6 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LIMA1Q9UHB6 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
LIMA1Q9UHB6 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
LIMA1Q9UHB6 AC006538.1-201ENST00000567905 1585 ntBASIC18.64■□□□□ 0.58
LIMA1Q9UHB6 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
LIMA1Q9UHB6 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 ABCD1P5-201ENST00000445663 754 ntBASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 LINC00265-3P-201ENST00000447588 903 ntBASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 MIR3180-1-201ENST00000580374 94 ntBASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 MIR3180-3-201ENST00000584616 94 ntBASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
LIMA1Q9UHB6 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 NME3-204ENST00000563498 920 ntTSL 2 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 COX5A-204ENST00000567270 579 ntTSL 3 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 GID4-202ENST00000376345 1391 ntTSL 3 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 KRT8P49-201ENST00000604166 1432 ntBASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 AC079776.2-201ENST00000641154 1609 ntBASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 PCDHA1-201ENST00000378133 2726 ntBASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
LIMA1Q9UHB6 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms