Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
MMP28Q9H239 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC15.14■□□□□ 0.01
MMP28Q9H239 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
MMP28Q9H239 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
MMP28Q9H239 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC15.14■□□□□ 0.01
MMP28Q9H239 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
MMP28Q9H239 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
MMP28Q9H239 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.14■□□□□ 0.01
MMP28Q9H239 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
MMP28Q9H239 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
MMP28Q9H239 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.13■□□□□ 0.01
MMP28Q9H239 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
MMP28Q9H239 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC15.13■□□□□ 0.01
MMP28Q9H239 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC15.13■□□□□ 0.01
MMP28Q9H239 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
MMP28Q9H239 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
MMP28Q9H239 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC15.13■□□□□ 0.01
MMP28Q9H239 KRT18P23-201ENST00000435622 1283 ntBASIC15.13■□□□□ 0.01
MMP28Q9H239 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC15.13■□□□□ 0.01
MMP28Q9H239 HOXB1-202ENST00000577092 1414 ntBASIC15.13■□□□□ 0.01
MMP28Q9H239 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 RWDD1-202ENST00000466444 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
MMP28Q9H239 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 AC099063.4-201ENST00000641099 1602 ntBASIC15.13■□□□□ 0.01
MMP28Q9H239 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.13■□□□□ 0.01
MMP28Q9H239 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.13■□□□□ 0.01
MMP28Q9H239 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
MMP28Q9H239 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC15.12■□□□□ 0.01
MMP28Q9H239 LBHD1-210ENST00000532208 1508 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
MMP28Q9H239 AL163051.1-201ENST00000569214 1512 ntBASIC15.12■□□□□ 0.01
MMP28Q9H239 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
MMP28Q9H239 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.12■□□□□ 0.01
MMP28Q9H239 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
MMP28Q9H239 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
MMP28Q9H239 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 MIR149-201ENST00000384879 89 ntBASIC15.12■□□□□ 0.01
MMP28Q9H239 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 LIN28AP1-201ENST00000429574 405 ntBASIC15.12■□□□□ 0.01
MMP28Q9H239 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC15.12■□□□□ 0.01
MMP28Q9H239 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC15.12■□□□□ 0.01
MMP28Q9H239 NME3-204ENST00000563498 920 ntTSL 2 BASIC15.12■□□□□ 0.01
MMP28Q9H239 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC15.12■□□□□ 0.01
MMP28Q9H239 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 NFIC-211ENST00000641145 8399 ntBASIC15.12■□□□□ 0.01
MMP28Q9H239 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
MMP28Q9H239 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
MMP28Q9H239 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.12■□□□□ 0.01
MMP28Q9H239 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
MMP28Q9H239 VILL-207ENST00000465644 1857 ntTSL 5 BASIC15.12■□□□□ 0.01
MMP28Q9H239 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC15.12■□□□□ 0.01
MMP28Q9H239 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
MMP28Q9H239 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC15.12■□□□□ 0.01
MMP28Q9H239 AC092053.1-201ENST00000605787 1936 ntBASIC15.11■□□□□ 0.01
MMP28Q9H239 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
MMP28Q9H239 FCER2-201ENST00000346664 1596 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 FCER2-205ENST00000597921 1560 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
MMP28Q9H239 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
MMP28Q9H239 AC073508.3-201ENST00000619697 1419 ntBASIC15.11■□□□□ 0.01
MMP28Q9H239 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
MMP28Q9H239 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC15.11■□□□□ 0.01
MMP28Q9H239 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms