Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 AC116353.5-201ENST00000638148 1699 ntBASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
PTCHD1Q96NR3 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 AC108073.2-201ENST00000464002 357 ntBASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 AC034105.1-201ENST00000563488 319 ntBASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 PIN1-206ENST00000587625 878 ntTSL 2 BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 TERC-201ENST00000602385 541 ntBASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 AC004790.2-201ENST00000623588 572 ntBASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 AC020916.1-201ENST00000587762 1774 ntBASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
PTCHD1Q96NR3 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 EGFEM1P-202ENST00000431685 1563 ntBASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 AP001094.4-201ENST00000579008 2176 ntBASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 MIR940-201ENST00000401276 94 ntBASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 MIR4751-201ENST00000578027 74 ntBASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 TCAP-202ENST00000578283 583 ntTSL 5 BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC16.09■□□□□ 0.17
PTCHD1Q96NR3 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 39.6 ms