Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 MTDHP5-201ENST00000598980 586 ntBASIC15.88■□□□□ 0.13
BEST3Q8N1M1 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 GNAS-203ENST00000306120 1878 ntBASIC15.88■□□□□ 0.13
BEST3Q8N1M1 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
BEST3Q8N1M1 AC002310.6-201ENST00000624451 1377 ntBASIC15.87■□□□□ 0.13
BEST3Q8N1M1 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 AC092865.6-201ENST00000642101 219 ntBASIC15.87■□□□□ 0.13
BEST3Q8N1M1 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 AL355312.1-201ENST00000407115 2176 ntBASIC15.87■□□□□ 0.13
BEST3Q8N1M1 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 CSAD-209ENST00000453446 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.87■□□□□ 0.13
BEST3Q8N1M1 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 TSC2-201ENST00000219476 6156 ntAPPRIS P3 TSL 5 BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 POLD4-207ENST00000531239 584 ntTSL 2 BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 OR7E47P-204ENST00000575924 449 ntBASIC15.86■□□□□ 0.13
BEST3Q8N1M1 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 AL513190.1-201ENST00000621254 727 ntBASIC15.86■□□□□ 0.13
BEST3Q8N1M1 AC010507.1-201ENST00000633895 436 ntBASIC15.86■□□□□ 0.13
BEST3Q8N1M1 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
BEST3Q8N1M1 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms