Protein–RNA interactions for Protein: Q8IWZ4

TRIM48, Tripartite motif-containing protein 48, humanhuman

Predictions only

Length 208 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48Q8IWZ4 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 HSPA4-205ENST00000617074 2358 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 FABP5-202ENST00000396359 986 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 MRPL20P1-201ENST00000400819 433 ntBASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 AC116612.1-201ENST00000557144 562 ntTSL 3 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
TRIM48Q8IWZ4 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 AC092865.5-201ENST00000545435 363 ntBASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 AC004790.2-201ENST00000623588 572 ntBASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC16.78■□□□□ 0.28
TRIM48Q8IWZ4 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 AL590787.1-201ENST00000568856 1315 ntBASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 GNE-204ENST00000539208 2190 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 KRT18P13-201ENST00000400056 1290 ntBASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 AC064836.3-201ENST00000607928 673 ntBASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
TRIM48Q8IWZ4 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM48Q8IWZ4 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM48Q8IWZ4 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM48Q8IWZ4 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM48Q8IWZ4 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM48Q8IWZ4 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM48Q8IWZ4 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.27
TRIM48Q8IWZ4 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms