Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 AC092910.1-201ENST00000482027 1129 ntBASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 AP002414.3-201ENST00000589352 1468 ntBASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 ZNF74-202ENST00000400451 3159 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.82■□□□□ 0.12
NUP54Q7Z3B4 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 CENPM-204ENST00000402420 688 ntTSL 5 BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 ELK2BP-201ENST00000415014 1224 ntBASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 AL805961.1-202ENST00000641562 540 ntBASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
NUP54Q7Z3B4 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 AC243591.1-201ENST00000452967 1364 ntBASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 AP002414.1-201ENST00000391405 1147 ntBASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 PTCHD3P3-201ENST00000403073 906 ntBASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 BX640515.1-201ENST00000617215 977 ntBASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 GGTLC5P-201ENST00000617623 998 ntBASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
NUP54Q7Z3B4 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms