Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 PTPA-220ENST00000436883 532 ntTSL 4 BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 ZNF890P-202ENST00000530367 1156 ntBASIC21.25■□□□□ 0.99
RC3H1Q5TC82 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 RN7SL828P-201ENST00000607615 303 ntBASIC21.25■□□□□ 0.99
RC3H1Q5TC82 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 CETN4P-206ENST00000642099 2168 ntBASIC21.25■□□□□ 0.99
RC3H1Q5TC82 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 AC012317.2-201ENST00000623305 2251 ntBASIC21.25■□□□□ 0.99
RC3H1Q5TC82 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
RC3H1Q5TC82 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 AC093525.9-201ENST00000624961 1746 ntBASIC21.24■□□□□ 0.99
RC3H1Q5TC82 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 AC098614.1-201ENST00000368528 745 ntBASIC21.24■□□□□ 0.99
RC3H1Q5TC82 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 AL132655.2-201ENST00000596276 594 ntBASIC21.24■□□□□ 0.99
RC3H1Q5TC82 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 SPTSSB-204ENST00000617024 1292 ntBASIC21.24■□□□□ 0.99
RC3H1Q5TC82 AC004840.1-201ENST00000636359 365 ntBASIC21.24■□□□□ 0.99
RC3H1Q5TC82 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 AC007541.1-201ENST00000570282 1469 ntBASIC21.24■□□□□ 0.99
RC3H1Q5TC82 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.24■□□□□ 0.99
RC3H1Q5TC82 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 STOM-203ENST00000538954 1257 ntTSL 5 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 AC140912.1-201ENST00000577171 1054 ntBASIC21.23■□□□□ 0.99
RC3H1Q5TC82 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
RC3H1Q5TC82 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
RC3H1Q5TC82 BANF1P1-201ENST00000553684 263 ntBASIC21.22■□□□□ 0.99
RC3H1Q5TC82 AL589739.1-201ENST00000607720 493 ntBASIC21.22■□□□□ 0.99
RC3H1Q5TC82 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms