Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 LGALS8-AS1-201ENST00000487567 1457 ntBASIC15.93■□□□□ 0.14
RFX4Q33E94 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC15.93■□□□□ 0.14
RFX4Q33E94 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
RFX4Q33E94 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC15.93■□□□□ 0.14
RFX4Q33E94 MTCL1P1-201ENST00000446207 792 ntBASIC15.93■□□□□ 0.14
RFX4Q33E94 AC068472.1-201ENST00000474589 881 ntBASIC15.93■□□□□ 0.14
RFX4Q33E94 AP003733.1-201ENST00000491725 852 ntBASIC15.93■□□□□ 0.14
RFX4Q33E94 ZNF444P1-201ENST00000559497 298 ntBASIC15.93■□□□□ 0.14
RFX4Q33E94 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 LIMD2-211ENST00000583211 1298 ntTSL 3 BASIC15.93■□□□□ 0.14
RFX4Q33E94 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC15.93■□□□□ 0.14
RFX4Q33E94 ANKRD20A8P-203ENST00000641373 517 ntBASIC15.93■□□□□ 0.14
RFX4Q33E94 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC15.93■□□□□ 0.14
RFX4Q33E94 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
RFX4Q33E94 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 AL662844.4-201ENST00000606367 2838 ntBASIC15.93■□□□□ 0.14
RFX4Q33E94 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
RFX4Q33E94 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC15.93■□□□□ 0.14
RFX4Q33E94 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC15.93■□□□□ 0.14
RFX4Q33E94 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
RFX4Q33E94 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC15.92■□□□□ 0.14
RFX4Q33E94 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
RFX4Q33E94 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
RFX4Q33E94 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 AL353692.3-201ENST00000407031 1396 ntBASIC15.92■□□□□ 0.14
RFX4Q33E94 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 MIR662-201ENST00000384847 95 ntBASIC15.92■□□□□ 0.14
RFX4Q33E94 AC096633.1-201ENST00000422446 749 ntBASIC15.92■□□□□ 0.14
RFX4Q33E94 BX664615.1-201ENST00000443558 458 ntBASIC15.92■□□□□ 0.14
RFX4Q33E94 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC15.92■□□□□ 0.14
RFX4Q33E94 AC092597.1-201ENST00000487352 616 ntBASIC15.92■□□□□ 0.14
RFX4Q33E94 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC15.92■□□□□ 0.14
RFX4Q33E94 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC15.92■□□□□ 0.14
RFX4Q33E94 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC15.92■□□□□ 0.14
RFX4Q33E94 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC15.92■□□□□ 0.14
RFX4Q33E94 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
RFX4Q33E94 TMED1-207ENST00000591695 809 ntTSL 5 BASIC15.92■□□□□ 0.14
RFX4Q33E94 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC15.92■□□□□ 0.14
RFX4Q33E94 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC15.92■□□□□ 0.14
RFX4Q33E94 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC15.92■□□□□ 0.14
RFX4Q33E94 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
RFX4Q33E94 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC15.92■□□□□ 0.14
RFX4Q33E94 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
RFX4Q33E94 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.92■□□□□ 0.14
RFX4Q33E94 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
RFX4Q33E94 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 AL365203.3-201ENST00000609742 2057 ntBASIC15.91■□□□□ 0.14
RFX4Q33E94 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.91■□□□□ 0.14
RFX4Q33E94 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
RFX4Q33E94 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
RFX4Q33E94 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC15.91■□□□□ 0.14
RFX4Q33E94 AC093585.1-201ENST00000425183 428 ntTSL 2 BASIC15.91■□□□□ 0.14
RFX4Q33E94 CNP-204ENST00000472031 1019 ntTSL 2 BASIC15.91■□□□□ 0.14
RFX4Q33E94 SNX5-210ENST00000481323 562 ntTSL 3 BASIC15.91■□□□□ 0.14
RFX4Q33E94 RBM14-RBM4-203ENST00000500635 829 ntTSL 2 BASIC15.91■□□□□ 0.14
RFX4Q33E94 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC15.91■□□□□ 0.14
RFX4Q33E94 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC15.91■□□□□ 0.14
RFX4Q33E94 NAA38-203ENST00000575071 553 ntTSL 2 BASIC15.91■□□□□ 0.14
RFX4Q33E94 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC15.91■□□□□ 0.14
RFX4Q33E94 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
RFX4Q33E94 AC139887.4-201ENST00000607877 719 ntBASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms