Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
CX3CL1P78423 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC13.81□□□□□ -0.2
CX3CL1P78423 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 PCDH8P1-201ENST00000428983 2773 ntBASIC13.81□□□□□ -0.2
CX3CL1P78423 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CX3CL1P78423 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC13.81□□□□□ -0.2
CX3CL1P78423 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 DFFB-203ENST00000341385 572 ntTSL 5 BASIC13.81□□□□□ -0.2
CX3CL1P78423 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC13.81□□□□□ -0.2
CX3CL1P78423 LSM5-204ENST00000409909 740 ntTSL 2 BASIC13.81□□□□□ -0.2
CX3CL1P78423 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC13.81□□□□□ -0.2
CX3CL1P78423 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC13.81□□□□□ -0.2
CX3CL1P78423 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC13.81□□□□□ -0.2
CX3CL1P78423 TBCB-205ENST00000585746 875 ntTSL 3 BASIC13.81□□□□□ -0.2
CX3CL1P78423 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC13.81□□□□□ -0.2
CX3CL1P78423 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
CX3CL1P78423 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC13.81□□□□□ -0.2
CX3CL1P78423 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC13.81□□□□□ -0.2
CX3CL1P78423 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.81□□□□□ -0.2
CX3CL1P78423 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC13.81□□□□□ -0.2
CX3CL1P78423 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC13.81□□□□□ -0.2
CX3CL1P78423 IRF5-210ENST00000477535 1374 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC13.81□□□□□ -0.2
CX3CL1P78423 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
CX3CL1P78423 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
CX3CL1P78423 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
CX3CL1P78423 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC13.8□□□□□ -0.2
CX3CL1P78423 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC13.8□□□□□ -0.2
CX3CL1P78423 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC13.8□□□□□ -0.2
CX3CL1P78423 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC13.8□□□□□ -0.2
CX3CL1P78423 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC13.8□□□□□ -0.2
CX3CL1P78423 AL020989.1-201ENST00000422979 469 ntBASIC13.8□□□□□ -0.2
CX3CL1P78423 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC13.8□□□□□ -0.2
CX3CL1P78423 SIGLEC30P-201ENST00000455569 941 ntBASIC13.8□□□□□ -0.2
CX3CL1P78423 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC13.8□□□□□ -0.2
CX3CL1P78423 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC13.8□□□□□ -0.2
CX3CL1P78423 AC106795.1-205ENST00000512851 1056 ntBASIC13.8□□□□□ -0.2
CX3CL1P78423 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 AP001269.4-201ENST00000609611 512 ntBASIC13.8□□□□□ -0.2
CX3CL1P78423 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
CX3CL1P78423 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
CX3CL1P78423 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
CX3CL1P78423 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC13.8□□□□□ -0.2
CX3CL1P78423 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
CX3CL1P78423 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CX3CL1P78423 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CX3CL1P78423 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CX3CL1P78423 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
CX3CL1P78423 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.79□□□□□ -0.2
CX3CL1P78423 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
CX3CL1P78423 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CX3CL1P78423 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC13.79□□□□□ -0.2
CX3CL1P78423 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
CX3CL1P78423 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC13.79□□□□□ -0.2
CX3CL1P78423 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC13.79□□□□□ -0.2
CX3CL1P78423 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
CX3CL1P78423 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CX3CL1P78423 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
CX3CL1P78423 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms