Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIM2P55344 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIM2P55344 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIM2P55344 AC136632.2-201ENST00000512891 861 ntBASIC16.21■□□□□ 0.19
LIM2P55344 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.21■□□□□ 0.19
LIM2P55344 PRKN-208ENST00000610470 531 ntTSL 2 BASIC16.21■□□□□ 0.19
LIM2P55344 PRKN-209ENST00000612485 225 ntTSL 5 BASIC16.21■□□□□ 0.19
LIM2P55344 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.21■□□□□ 0.19
LIM2P55344 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LIM2P55344 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
LIM2P55344 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LIM2P55344 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.21■□□□□ 0.19
LIM2P55344 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
LIM2P55344 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIM2P55344 AP002414.3-201ENST00000589352 1468 ntBASIC16.21■□□□□ 0.19
LIM2P55344 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
LIM2P55344 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC16.21■□□□□ 0.19
LIM2P55344 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LIM2P55344 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
LIM2P55344 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
LIM2P55344 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
LIM2P55344 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
LIM2P55344 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.21■□□□□ 0.18
LIM2P55344 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.18
LIM2P55344 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
LIM2P55344 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
LIM2P55344 HLA-A-201ENST00000376802 1334 ntBASIC16.2■□□□□ 0.18
LIM2P55344 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.2■□□□□ 0.18
LIM2P55344 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
LIM2P55344 FRMD8P1-201ENST00000440433 1524 ntBASIC16.2■□□□□ 0.18
LIM2P55344 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.2■□□□□ 0.18
LIM2P55344 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.2■□□□□ 0.18
LIM2P55344 CENPM-204ENST00000402420 688 ntTSL 5 BASIC16.2■□□□□ 0.18
LIM2P55344 AC026396.1-201ENST00000419388 421 ntBASIC16.2■□□□□ 0.18
LIM2P55344 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 FDX1P1-201ENST00000449115 551 ntBASIC16.2■□□□□ 0.18
LIM2P55344 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC16.2■□□□□ 0.18
LIM2P55344 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.2■□□□□ 0.18
LIM2P55344 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LIM2P55344 AC124947.2-201ENST00000547118 1133 ntBASIC16.2■□□□□ 0.18
LIM2P55344 RPS29-206ENST00000557111 488 ntTSL 2 BASIC16.2■□□□□ 0.18
LIM2P55344 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.2■□□□□ 0.18
LIM2P55344 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.2■□□□□ 0.18
LIM2P55344 AL356488.2-201ENST00000602755 427 ntBASIC16.2■□□□□ 0.18
LIM2P55344 MIR1199-201ENST00000621445 119 ntBASIC16.2■□□□□ 0.18
LIM2P55344 AL805961.1-202ENST00000641562 540 ntBASIC16.2■□□□□ 0.18
LIM2P55344 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC16.2■□□□□ 0.18
LIM2P55344 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.2■□□□□ 0.18
LIM2P55344 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
LIM2P55344 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.2■□□□□ 0.18
LIM2P55344 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.2■□□□□ 0.18
LIM2P55344 UBALD1-205ENST00000590891 2641 ntBASIC16.2■□□□□ 0.18
LIM2P55344 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
LIM2P55344 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
LIM2P55344 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.2■□□□□ 0.18
LIM2P55344 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.2■□□□□ 0.18
LIM2P55344 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.2■□□□□ 0.18
LIM2P55344 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
LIM2P55344 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC16.19■□□□□ 0.18
LIM2P55344 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.19■□□□□ 0.18
LIM2P55344 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC16.19■□□□□ 0.18
LIM2P55344 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.19■□□□□ 0.18
LIM2P55344 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.19■□□□□ 0.18
LIM2P55344 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
LIM2P55344 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
LIM2P55344 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LIM2P55344 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.19■□□□□ 0.18
LIM2P55344 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.19■□□□□ 0.18
LIM2P55344 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC16.19■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms