Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXA1P55317 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXA1P55317 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 AC097637.2-201ENST00000624096 1997 ntBASIC16.55■□□□□ 0.24
FOXA1P55317 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC16.55■□□□□ 0.24
FOXA1P55317 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
FOXA1P55317 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
FOXA1P55317 CICP6-201ENST00000457191 2729 ntBASIC16.54■□□□□ 0.24
FOXA1P55317 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
FOXA1P55317 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
FOXA1P55317 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
FOXA1P55317 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXA1P55317 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
FOXA1P55317 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.54■□□□□ 0.24
FOXA1P55317 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
FOXA1P55317 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 C6orf15-201ENST00000259870 1140 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
FOXA1P55317 AP000867.3-201ENST00000524675 377 ntBASIC16.54■□□□□ 0.24
FOXA1P55317 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC16.54■□□□□ 0.24
FOXA1P55317 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC16.54■□□□□ 0.24
FOXA1P55317 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 ALOX12P2-203ENST00000570921 1945 ntBASIC16.54■□□□□ 0.24
FOXA1P55317 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC16.54■□□□□ 0.24
FOXA1P55317 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
FOXA1P55317 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.54■□□□□ 0.24
FOXA1P55317 SRSF12-201ENST00000452027 3599 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
FOXA1P55317 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
FOXA1P55317 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXA1P55317 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
FOXA1P55317 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
FOXA1P55317 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXA1P55317 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.53■□□□□ 0.24
FOXA1P55317 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC16.53■□□□□ 0.24
FOXA1P55317 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.53■□□□□ 0.24
FOXA1P55317 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC16.53■□□□□ 0.24
FOXA1P55317 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
FOXA1P55317 FAM210CP-201ENST00000445714 574 ntBASIC16.53■□□□□ 0.24
FOXA1P55317 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC16.53■□□□□ 0.24
FOXA1P55317 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.53■□□□□ 0.24
FOXA1P55317 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.53■□□□□ 0.24
FOXA1P55317 CYB561-217ENST00000582997 877 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXA1P55317 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXA1P55317 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.53■□□□□ 0.24
FOXA1P55317 DBP-204ENST00000599385 709 ntTSL 3 BASIC16.53■□□□□ 0.24
FOXA1P55317 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
FOXA1P55317 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
FOXA1P55317 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.53■□□□□ 0.24
FOXA1P55317 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.53■□□□□ 0.24
FOXA1P55317 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
FOXA1P55317 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.53■□□□□ 0.24
FOXA1P55317 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.53■□□□□ 0.24
FOXA1P55317 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
FOXA1P55317 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.53■□□□□ 0.24
FOXA1P55317 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
FOXA1P55317 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.52■□□□□ 0.24
FOXA1P55317 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
FOXA1P55317 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms