Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
SOX2P48431 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
SOX2P48431 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
SOX2P48431 Z83836.1-201ENST00000624605 1642 ntBASIC15.1■□□□□ 0.01
SOX2P48431 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
SOX2P48431 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 COQ9-201ENST00000262507 1677 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX2P48431 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX2P48431 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX2P48431 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
SOX2P48431 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC15.09■□□□□ 0.01
SOX2P48431 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC15.09■□□□□ 0.01
SOX2P48431 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC15.09■□□□□ 0.01
SOX2P48431 VENTXP5-201ENST00000523979 775 ntBASIC15.09■□□□□ 0.01
SOX2P48431 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 AC124947.2-201ENST00000547118 1133 ntBASIC15.09■□□□□ 0.01
SOX2P48431 DET1-205ENST00000558413 583 ntTSL 4 BASIC15.09■□□□□ 0.01
SOX2P48431 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
SOX2P48431 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX2P48431 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 FGF14-AS2-201ENST00000606448 1074 ntBASIC15.09■□□□□ 0.01
SOX2P48431 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.09■□□□□ 0.01
SOX2P48431 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX2P48431 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC15.09■□□□□ 0.01
SOX2P48431 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC15.09■□□□□ 0.01
SOX2P48431 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC15.09■□□□□ 0.01
SOX2P48431 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC15.09■□□□□ 0.01
SOX2P48431 HYMAI-201ENST00000635591 3347 ntBASIC15.09■□□□□ 0.01
SOX2P48431 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC15.08■□□□□ 0.01
SOX2P48431 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC15.08■□□□□ 0.01
SOX2P48431 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0.01
SOX2P48431 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC15.08■□□□□ 0.01
SOX2P48431 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SOX2P48431 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
SOX2P48431 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
SOX2P48431 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SOX2P48431 EGFEM1P-202ENST00000431685 1563 ntBASIC15.08■□□□□ 0
SOX2P48431 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SOX2P48431 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
SOX2P48431 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.08■□□□□ 0
SOX2P48431 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SOX2P48431 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SOX2P48431 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SOX2P48431 AP001625.2-201ENST00000442605 575 ntTSL 2 BASIC15.08■□□□□ 0
SOX2P48431 KRT18P38-201ENST00000449496 1282 ntBASIC15.08■□□□□ 0
SOX2P48431 GXYLT1P3-201ENST00000453058 1193 ntBASIC15.08■□□□□ 0
SOX2P48431 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC15.08■□□□□ 0
SOX2P48431 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC15.08■□□□□ 0
SOX2P48431 RNF126P1-202ENST00000569893 925 ntBASIC15.08■□□□□ 0
SOX2P48431 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC15.08■□□□□ 0
SOX2P48431 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC15.08■□□□□ 0
SOX2P48431 AC011511.2-201ENST00000592893 918 ntTSL 3 BASIC15.08■□□□□ 0
SOX2P48431 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC15.08■□□□□ 0
SOX2P48431 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.08■□□□□ 0
SOX2P48431 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.08■□□□□ 0
SOX2P48431 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
SOX2P48431 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC15.08■□□□□ 0
SOX2P48431 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC15.08■□□□□ 0
SOX2P48431 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.08■□□□□ 0
SOX2P48431 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SOX2P48431 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC15.08■□□□□ 0
SOX2P48431 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC15.08■□□□□ 0
SOX2P48431 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
SOX2P48431 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC15.08■□□□□ 0
SOX2P48431 LGALS8-AS1-201ENST00000487567 1457 ntBASIC15.08■□□□□ 0
SOX2P48431 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.07■□□□□ 0
SOX2P48431 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
SOX2P48431 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC15.07■□□□□ 0
SOX2P48431 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
SOX2P48431 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC15.07■□□□□ 0
SOX2P48431 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.07■□□□□ 0
SOX2P48431 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC15.07■□□□□ 0
SOX2P48431 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
SOX2P48431 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC15.07■□□□□ 0
SOX2P48431 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
SOX2P48431 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC15.07■□□□□ 0
SOX2P48431 PCDHA1-201ENST00000378133 2726 ntBASIC15.07■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms