Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CICP6-201ENST00000457191 2729 ntBASIC16.13■□□□□ 0.17
SOX3P41225 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.13■□□□□ 0.17
SOX3P41225 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SOX3P41225 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
SOX3P41225 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
SOX3P41225 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SOX3P41225 AC148477.5-201ENST00000625164 1645 ntBASIC16.12■□□□□ 0.17
SOX3P41225 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC16.12■□□□□ 0.17
SOX3P41225 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SOX3P41225 AC106886.4-201ENST00000623557 2502 ntBASIC16.12■□□□□ 0.17
SOX3P41225 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
SOX3P41225 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 CROCCP1-201ENST00000426910 5675 ntBASIC16.12■□□□□ 0.17
SOX3P41225 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC16.12■□□□□ 0.17
SOX3P41225 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 AC105411.1-202ENST00000565050 1476 ntTSL 5 BASIC16.12■□□□□ 0.17
SOX3P41225 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.12■□□□□ 0.17
SOX3P41225 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC16.12■□□□□ 0.17
SOX3P41225 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SOX3P41225 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.12■□□□□ 0.17
SOX3P41225 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.12■□□□□ 0.17
SOX3P41225 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.12■□□□□ 0.17
SOX3P41225 AC093909.1-201ENST00000504731 1122 ntBASIC16.12■□□□□ 0.17
SOX3P41225 STK19B-204ENST00000512515 211 ntBASIC16.12■□□□□ 0.17
SOX3P41225 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC16.12■□□□□ 0.17
SOX3P41225 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.12■□□□□ 0.17
SOX3P41225 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.12■□□□□ 0.17
SOX3P41225 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC16.12■□□□□ 0.17
SOX3P41225 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SOX3P41225 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.12■□□□□ 0.17
SOX3P41225 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.12■□□□□ 0.17
SOX3P41225 STK25P1-201ENST00000585406 838 ntBASIC16.12■□□□□ 0.17
SOX3P41225 COPE-211ENST00000600932 1144 ntTSL 5 BASIC16.12■□□□□ 0.17
SOX3P41225 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.12■□□□□ 0.17
SOX3P41225 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC16.12■□□□□ 0.17
SOX3P41225 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SOX3P41225 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SOX3P41225 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SOX3P41225 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.11■□□□□ 0.17
SOX3P41225 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
SOX3P41225 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.11■□□□□ 0.17
SOX3P41225 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.11■□□□□ 0.17
SOX3P41225 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SOX3P41225 RPS2P28-201ENST00000314255 741 ntBASIC16.11■□□□□ 0.17
SOX3P41225 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.11■□□□□ 0.17
SOX3P41225 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
SOX3P41225 AC005104.2-201ENST00000427818 678 ntBASIC16.11■□□□□ 0.17
SOX3P41225 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC16.11■□□□□ 0.17
SOX3P41225 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC16.11■□□□□ 0.17
SOX3P41225 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC16.11■□□□□ 0.17
SOX3P41225 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.11■□□□□ 0.17
SOX3P41225 AC120114.3-201ENST00000611923 658 ntBASIC16.11■□□□□ 0.17
SOX3P41225 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
SOX3P41225 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.11■□□□□ 0.17
SOX3P41225 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SOX3P41225 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.11■□□□□ 0.17
SOX3P41225 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.11■□□□□ 0.17
SOX3P41225 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
SOX3P41225 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
SOX3P41225 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
SOX3P41225 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
SOX3P41225 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SOX3P41225 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
SOX3P41225 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
SOX3P41225 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
SOX3P41225 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC16.1■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms