Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
SMARCA1P28370 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC19.51■□□□□ 0.71
SMARCA1P28370 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 PCDHB17P-201ENST00000539533 2393 ntBASIC19.51■□□□□ 0.71
SMARCA1P28370 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 AC026471.1-201ENST00000564629 3026 ntBASIC19.51■□□□□ 0.71
SMARCA1P28370 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC19.51■□□□□ 0.71
SMARCA1P28370 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
SMARCA1P28370 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
SMARCA1P28370 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
SMARCA1P28370 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
SMARCA1P28370 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCA1P28370 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCA1P28370 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC19.5■□□□□ 0.71
SMARCA1P28370 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
SMARCA1P28370 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCA1P28370 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCA1P28370 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCA1P28370 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCA1P28370 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC19.5■□□□□ 0.71
SMARCA1P28370 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCA1P28370 YBX2P1-201ENST00000394192 760 ntBASIC19.5■□□□□ 0.71
SMARCA1P28370 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.5■□□□□ 0.71
SMARCA1P28370 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.5■□□□□ 0.71
SMARCA1P28370 MIR3909-201ENST00000579518 119 ntBASIC19.5■□□□□ 0.71
SMARCA1P28370 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC19.5■□□□□ 0.71
SMARCA1P28370 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCA1P28370 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCA1P28370 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCA1P28370 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
SMARCA1P28370 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC19.5■□□□□ 0.71
SMARCA1P28370 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
SMARCA1P28370 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCA1P28370 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.49■□□□□ 0.71
SMARCA1P28370 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC19.49■□□□□ 0.71
SMARCA1P28370 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCA1P28370 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.49■□□□□ 0.71
SMARCA1P28370 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCA1P28370 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC19.49■□□□□ 0.71
SMARCA1P28370 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCA1P28370 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.49■□□□□ 0.71
SMARCA1P28370 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCA1P28370 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCA1P28370 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC19.49■□□□□ 0.71
SMARCA1P28370 AC140658.5-201ENST00000438532 169 ntBASIC19.49■□□□□ 0.71
SMARCA1P28370 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC19.49■□□□□ 0.71
SMARCA1P28370 MTRF1LP2-201ENST00000506027 1122 ntBASIC19.49■□□□□ 0.71
SMARCA1P28370 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCA1P28370 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCA1P28370 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.49■□□□□ 0.71
SMARCA1P28370 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.49■□□□□ 0.71
SMARCA1P28370 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.49■□□□□ 0.71
SMARCA1P28370 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC19.49■□□□□ 0.71
SMARCA1P28370 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
SMARCA1P28370 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCA1P28370 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCA1P28370 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCA1P28370 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCA1P28370 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCA1P28370 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SMARCA1P28370 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
SMARCA1P28370 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCA1P28370 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC19.48■□□□□ 0.71
SMARCA1P28370 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC19.48■□□□□ 0.71
SMARCA1P28370 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SMARCA1P28370 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCA1P28370 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCA1P28370 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCA1P28370 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCA1P28370 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCA1P28370 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SMARCA1P28370 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCA1P28370 DNAJB3-201ENST00000446806 729 ntBASIC19.48■□□□□ 0.71
SMARCA1P28370 NMU-203ENST00000507338 658 ntTSL 3 BASIC19.48■□□□□ 0.71
SMARCA1P28370 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCA1P28370 CYP2A7P1-201ENST00000595391 815 ntBASIC19.48■□□□□ 0.71
SMARCA1P28370 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.48■□□□□ 0.71
SMARCA1P28370 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC19.48■□□□□ 0.71
SMARCA1P28370 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SMARCA1P28370 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC19.48■□□□□ 0.71
SMARCA1P28370 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SMARCA1P28370 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCA1P28370 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC19.48■□□□□ 0.71
SMARCA1P28370 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCA1P28370 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
SMARCA1P28370 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCA1P28370 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCA1P28370 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCA1P28370 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SMARCA1P28370 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
SMARCA1P28370 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCA1P28370 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SMARCA1P28370 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms