Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 SEC1P-202ENST00000473944 940 ntBASIC17.22■□□□□ 0.35
VIMP08670 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC17.22■□□□□ 0.35
VIMP08670 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC17.22■□□□□ 0.35
VIMP08670 AL353719.1-201ENST00000566847 864 ntBASIC17.22■□□□□ 0.35
VIMP08670 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC17.22■□□□□ 0.35
VIMP08670 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC17.22■□□□□ 0.35
VIMP08670 AC006058.3-201ENST00000606217 1069 ntBASIC17.22■□□□□ 0.35
VIMP08670 CD177P1-201ENST00000606252 935 ntBASIC17.22■□□□□ 0.35
VIMP08670 AL023803.3-201ENST00000615559 522 ntBASIC17.22■□□□□ 0.35
VIMP08670 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
VIMP08670 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.22■□□□□ 0.35
VIMP08670 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
VIMP08670 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VIMP08670 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC17.22■□□□□ 0.35
VIMP08670 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC17.22■□□□□ 0.35
VIMP08670 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
VIMP08670 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
VIMP08670 SRI-203ENST00000419179 1307 ntTSL 2 BASIC17.21■□□□□ 0.35
VIMP08670 ALDH3B1-206ENST00000615463 1300 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.21■□□□□ 0.35
VIMP08670 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.21■□□□□ 0.35
VIMP08670 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
VIMP08670 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
VIMP08670 AL365209.1-201ENST00000624418 6473 ntBASIC17.21■□□□□ 0.35
VIMP08670 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC17.21■□□□□ 0.35
VIMP08670 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
VIMP08670 DUOX1-201ENST00000321429 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
VIMP08670 MOXD1-202ENST00000367963 3059 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.21■□□□□ 0.35
VIMP08670 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 TSPY17P-201ENST00000450329 467 ntBASIC17.21■□□□□ 0.35
VIMP08670 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.21■□□□□ 0.35
VIMP08670 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC17.21■□□□□ 0.35
VIMP08670 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC17.21■□□□□ 0.35
VIMP08670 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.35
VIMP08670 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC17.21■□□□□ 0.35
VIMP08670 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.21■□□□□ 0.35
VIMP08670 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC17.21■□□□□ 0.35
VIMP08670 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VIMP08670 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
VIMP08670 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
VIMP08670 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.2■□□□□ 0.34
VIMP08670 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC17.2■□□□□ 0.34
VIMP08670 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
VIMP08670 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC17.2■□□□□ 0.34
VIMP08670 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.2■□□□□ 0.34
VIMP08670 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.2■□□□□ 0.34
VIMP08670 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.2■□□□□ 0.34
VIMP08670 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.2■□□□□ 0.34
VIMP08670 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC17.2■□□□□ 0.34
VIMP08670 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC17.2■□□□□ 0.34
VIMP08670 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 AC024243.1-201ENST00000609234 778 ntBASIC17.2■□□□□ 0.34
VIMP08670 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
VIMP08670 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC17.2■□□□□ 0.34
VIMP08670 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
VIMP08670 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms