Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 AC109462.3-201ENST00000573934 613 ntBASIC16.79■□□□□ 0.28
VPS4BO75351 AC019129.2-201ENST00000609837 1235 ntBASIC16.79■□□□□ 0.28
VPS4BO75351 REXO1L6P-202ENST00000619970 1078 ntBASIC16.79■□□□□ 0.28
VPS4BO75351 HSP90B1-211ENST00000640977 1127 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS4BO75351 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
VPS4BO75351 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.79■□□□□ 0.28
VPS4BO75351 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4BO75351 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VPS4BO75351 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4BO75351 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC16.79■□□□□ 0.28
VPS4BO75351 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4BO75351 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
VPS4BO75351 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.79■□□□□ 0.28
VPS4BO75351 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 AC092053.1-201ENST00000605787 1936 ntBASIC16.78■□□□□ 0.28
VPS4BO75351 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
VPS4BO75351 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.78■□□□□ 0.28
VPS4BO75351 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS4BO75351 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 FAM197Y8-203ENST00000450145 560 ntBASIC16.78■□□□□ 0.28
VPS4BO75351 FNDC5-205ENST00000496770 837 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 AC122714.2-201ENST00000502787 707 ntBASIC16.78■□□□□ 0.28
VPS4BO75351 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS4BO75351 AL449423.1-201ENST00000578935 435 ntTSL 3 BASIC16.78■□□□□ 0.28
VPS4BO75351 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC16.78■□□□□ 0.28
VPS4BO75351 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS4BO75351 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
VPS4BO75351 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS4BO75351 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC16.78■□□□□ 0.28
VPS4BO75351 TLX2-204ENST00000621092 1452 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
VPS4BO75351 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.78■□□□□ 0.28
VPS4BO75351 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
VPS4BO75351 JMJD7-201ENST00000397299 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
VPS4BO75351 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC16.78■□□□□ 0.28
VPS4BO75351 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
VPS4BO75351 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
VPS4BO75351 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VPS4BO75351 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS4BO75351 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 PMS2P7-201ENST00000506558 1336 ntBASIC16.77■□□□□ 0.28
VPS4BO75351 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
VPS4BO75351 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.28
VPS4BO75351 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS4BO75351 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS4BO75351 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
VPS4BO75351 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 PCDHB19P-201ENST00000570871 2371 ntBASIC16.77■□□□□ 0.28
VPS4BO75351 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 TFF3-201ENST00000291525 407 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
VPS4BO75351 AKR1C7P-201ENST00000305623 895 ntBASIC16.77■□□□□ 0.28
VPS4BO75351 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 CXorf40A-202ENST00000393985 1148 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 NUS1P2-201ENST00000417358 873 ntBASIC16.77■□□□□ 0.28
VPS4BO75351 AC103564.2-201ENST00000432853 1299 ntBASIC16.77■□□□□ 0.28
VPS4BO75351 AC007967.3-201ENST00000434308 558 ntBASIC16.77■□□□□ 0.28
VPS4BO75351 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.77■□□□□ 0.28
VPS4BO75351 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS4BO75351 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS4BO75351 AF186996.4-201ENST00000467186 377 ntBASIC16.77■□□□□ 0.28
VPS4BO75351 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.77■□□□□ 0.28
VPS4BO75351 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC16.77■□□□□ 0.28
VPS4BO75351 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC16.77■□□□□ 0.28
VPS4BO75351 TERC-201ENST00000602385 541 ntBASIC16.77■□□□□ 0.28
VPS4BO75351 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
VPS4BO75351 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
VPS4BO75351 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS4BO75351 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS4BO75351 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.77■□□□□ 0.27
VPS4BO75351 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS4BO75351 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
VPS4BO75351 AL603756.1-201ENST00000606511 2163 ntBASIC16.77■□□□□ 0.27
VPS4BO75351 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS4BO75351 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
VPS4BO75351 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.76■□□□□ 0.27
VPS4BO75351 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
VPS4BO75351 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms