Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC19.1■□□□□ 0.65
MSH4O15457 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.1■□□□□ 0.65
MSH4O15457 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
MSH4O15457 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
MSH4O15457 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
MSH4O15457 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC19.1■□□□□ 0.65
MSH4O15457 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC19.1■□□□□ 0.65
MSH4O15457 RPL28-209ENST00000560055 670 ntTSL 3 BASIC19.1■□□□□ 0.65
MSH4O15457 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 ADRA1A-202ENST00000354550 1765 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 HARS-204ENST00000438307 1789 ntTSL 2 BASIC19.1■□□□□ 0.65
MSH4O15457 TTLL10-202ENST00000379289 2259 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
MSH4O15457 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.1■□□□□ 0.65
MSH4O15457 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
MSH4O15457 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
MSH4O15457 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
MSH4O15457 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC19.09■□□□□ 0.65
MSH4O15457 AL353732.1-201ENST00000569618 1459 ntBASIC19.09■□□□□ 0.65
MSH4O15457 HCG11-201ENST00000411553 5696 ntBASIC19.09■□□□□ 0.65
MSH4O15457 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
MSH4O15457 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
MSH4O15457 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
MSH4O15457 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.09■□□□□ 0.65
MSH4O15457 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 PCDHB17P-201ENST00000539533 2393 ntBASIC19.09■□□□□ 0.65
MSH4O15457 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC19.09■□□□□ 0.65
MSH4O15457 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 MCCD1P2-201ENST00000423228 335 ntBASIC19.09■□□□□ 0.65
MSH4O15457 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC19.09■□□□□ 0.65
MSH4O15457 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC19.09■□□□□ 0.65
MSH4O15457 AC092865.5-201ENST00000545435 363 ntBASIC19.09■□□□□ 0.65
MSH4O15457 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.09■□□□□ 0.65
MSH4O15457 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC19.09■□□□□ 0.65
MSH4O15457 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 MPDU1-223ENST00000582151 728 ntBASIC19.09■□□□□ 0.65
MSH4O15457 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC19.09■□□□□ 0.65
MSH4O15457 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC19.09■□□□□ 0.65
MSH4O15457 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC19.09■□□□□ 0.65
MSH4O15457 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC19.09■□□□□ 0.65
MSH4O15457 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
MSH4O15457 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
MSH4O15457 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSH4O15457 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC19.08■□□□□ 0.65
MSH4O15457 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSH4O15457 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
MSH4O15457 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSH4O15457 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSH4O15457 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.08■□□□□ 0.65
MSH4O15457 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
MSH4O15457 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC19.08■□□□□ 0.65
MSH4O15457 AL121761.2-201ENST00000598007 1648 ntBASIC19.08■□□□□ 0.65
MSH4O15457 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.65
MSH4O15457 TUBB8P12-201ENST00000308911 1335 ntBASIC19.08■□□□□ 0.65
MSH4O15457 TUBB7P-202ENST00000428444 1305 ntBASIC19.08■□□□□ 0.65
MSH4O15457 TUBB8P7-204ENST00000567960 1332 ntBASIC19.08■□□□□ 0.65
MSH4O15457 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
MSH4O15457 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSH4O15457 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSH4O15457 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
MSH4O15457 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
MSH4O15457 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC19.08■□□□□ 0.64
MSH4O15457 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC19.08■□□□□ 0.64
MSH4O15457 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
MSH4O15457 SMN2-210ENST00000511812 867 ntTSL 2 BASIC19.08■□□□□ 0.64
MSH4O15457 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC19.08■□□□□ 0.64
MSH4O15457 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.08■□□□□ 0.64
MSH4O15457 MIR4515-201ENST00000584082 81 ntBASIC19.08■□□□□ 0.64
MSH4O15457 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC19.08■□□□□ 0.64
MSH4O15457 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
MSH4O15457 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
MSH4O15457 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 36 ms