Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC16.47■□□□□ 0.23
SLC28A1O00337 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
SLC28A1O00337 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.47■□□□□ 0.23
SLC28A1O00337 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC16.47■□□□□ 0.23
SLC28A1O00337 SPDYE21P-201ENST00000413323 827 ntBASIC16.47■□□□□ 0.23
SLC28A1O00337 NUS1P1-201ENST00000446295 882 ntBASIC16.47■□□□□ 0.23
SLC28A1O00337 MTG1-205ENST00000477902 1283 ntTSL 3 BASIC16.47■□□□□ 0.23
SLC28A1O00337 AC104819.1-201ENST00000504587 486 ntBASIC16.47■□□□□ 0.23
SLC28A1O00337 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC16.47■□□□□ 0.23
SLC28A1O00337 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC16.47■□□□□ 0.23
SLC28A1O00337 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.47■□□□□ 0.23
SLC28A1O00337 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.47■□□□□ 0.23
SLC28A1O00337 AC092329.2-201ENST00000598402 547 ntBASIC16.47■□□□□ 0.23
SLC28A1O00337 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.47■□□□□ 0.23
SLC28A1O00337 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
SLC28A1O00337 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 HS6ST2-203ENST00000406696 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
SLC28A1O00337 PCDHB17P-201ENST00000539533 2393 ntBASIC16.46■□□□□ 0.23
SLC28A1O00337 NFIC-211ENST00000641145 8399 ntBASIC16.46■□□□□ 0.23
SLC28A1O00337 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC16.46■□□□□ 0.23
SLC28A1O00337 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 AC148477.5-201ENST00000625164 1645 ntBASIC16.46■□□□□ 0.23
SLC28A1O00337 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.46■□□□□ 0.23
SLC28A1O00337 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.46■□□□□ 0.23
SLC28A1O00337 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.46■□□□□ 0.23
SLC28A1O00337 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.46■□□□□ 0.23
SLC28A1O00337 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.46■□□□□ 0.23
SLC28A1O00337 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC16.46■□□□□ 0.23
SLC28A1O00337 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.46■□□□□ 0.23
SLC28A1O00337 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC16.46■□□□□ 0.23
SLC28A1O00337 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC16.46■□□□□ 0.23
SLC28A1O00337 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC16.46■□□□□ 0.23
SLC28A1O00337 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.46■□□□□ 0.23
SLC28A1O00337 ARHGAP8-201ENST00000336963 1487 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.46■□□□□ 0.23
SLC28A1O00337 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 SFRP1-201ENST00000220772 4492 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
SLC28A1O00337 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
SLC28A1O00337 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
SLC28A1O00337 AC097637.2-201ENST00000624096 1997 ntBASIC16.46■□□□□ 0.22
SLC28A1O00337 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
SLC28A1O00337 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.22
SLC28A1O00337 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
SLC28A1O00337 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SLC28A1O00337 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC16.45■□□□□ 0.22
SLC28A1O00337 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SLC28A1O00337 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.45■□□□□ 0.22
SLC28A1O00337 SIGLEC16-201ENST00000599858 1437 ntBASIC16.45■□□□□ 0.22
SLC28A1O00337 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC28A1O00337 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SLC28A1O00337 AC068944.1-201ENST00000514855 1604 ntTSL 2 BASIC16.45■□□□□ 0.22
SLC28A1O00337 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC28A1O00337 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC28A1O00337 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.45■□□□□ 0.22
SLC28A1O00337 FER1L4-210ENST00000615531 5998 ntBASIC16.45■□□□□ 0.22
SLC28A1O00337 NKIRAS1-206ENST00000425478 2014 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC28A1O00337 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC16.45■□□□□ 0.22
SLC28A1O00337 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC28A1O00337 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC16.45■□□□□ 0.22
SLC28A1O00337 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
SLC28A1O00337 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
SLC28A1O00337 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
SLC28A1O00337 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC16.45■□□□□ 0.22
SLC28A1O00337 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SLC28A1O00337 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
SLC28A1O00337 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC16.45■□□□□ 0.22
SLC28A1O00337 AP000867.3-201ENST00000524675 377 ntBASIC16.45■□□□□ 0.22
SLC28A1O00337 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
SLC28A1O00337 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.45■□□□□ 0.22
SLC28A1O00337 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms