Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM49D1C9J1S8 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.16■□□□□ 0.34
TRIM49D1C9J1S8 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM49D1C9J1S8 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM49D1C9J1S8 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.16■□□□□ 0.34
TRIM49D1C9J1S8 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
TRIM49D1C9J1S8 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM49D1C9J1S8 HPCAL1-206ENST00000613496 1547 ntAPPRIS P1 TSL 3 BASIC17.16■□□□□ 0.34
TRIM49D1C9J1S8 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM49D1C9J1S8 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
TRIM49D1C9J1S8 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 AC132938.5-201ENST00000624980 1813 ntBASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 BOC-211ENST00000484034 1286 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 IGHV3-41-201ENST00000613121 348 ntBASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 AC073912.3-201ENST00000624414 853 ntBASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 AL391256.1-201ENST00000443260 1855 ntBASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 LTF-203ENST00000426532 2494 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 DNAAF2-201ENST00000298292 2963 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 FRMD6-AS1-201ENST00000617151 2229 ntBASIC17.15■□□□□ 0.34
TRIM49D1C9J1S8 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
TRIM49D1C9J1S8 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC17.14■□□□□ 0.34
TRIM49D1C9J1S8 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.34
TRIM49D1C9J1S8 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 AC003669.1-201ENST00000334569 611 ntBASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
TRIM49D1C9J1S8 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
TRIM49D1C9J1S8 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms