Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS28Q9UK41 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
VPS28Q9UK41 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS28Q9UK41 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
VPS28Q9UK41 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.6■□□□□ 0.41
VPS28Q9UK41 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
VPS28Q9UK41 PPIB-201ENST00000300026 1081 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 LBH-204ENST00000406087 559 ntTSL 4 BASIC17.6■□□□□ 0.41
VPS28Q9UK41 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC17.6■□□□□ 0.41
VPS28Q9UK41 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.6■□□□□ 0.41
VPS28Q9UK41 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC17.6■□□□□ 0.41
VPS28Q9UK41 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS28Q9UK41 MIR4751-201ENST00000578027 74 ntBASIC17.6■□□□□ 0.41
VPS28Q9UK41 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 AL671883.3-201ENST00000603274 991 ntBASIC17.6■□□□□ 0.41
VPS28Q9UK41 AC027601.4-201ENST00000611259 610 ntBASIC17.6■□□□□ 0.41
VPS28Q9UK41 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 AC016396.2-201ENST00000562575 1417 ntBASIC17.6■□□□□ 0.41
VPS28Q9UK41 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 AL023806.1-201ENST00000603994 1649 ntBASIC17.6■□□□□ 0.41
VPS28Q9UK41 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS28Q9UK41 BOC-212ENST00000485230 2173 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS28Q9UK41 TNRC18P3-201ENST00000441896 2691 ntBASIC17.6■□□□□ 0.41
VPS28Q9UK41 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
VPS28Q9UK41 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS28Q9UK41 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS28Q9UK41 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 NPR3-203ENST00000415167 1753 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS28Q9UK41 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS28Q9UK41 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS28Q9UK41 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS28Q9UK41 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 MED15P5-201ENST00000423150 992 ntBASIC17.59■□□□□ 0.41
VPS28Q9UK41 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 MIR503HG-203ENST00000441492 649 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS28Q9UK41 POLD2P1-201ENST00000511220 997 ntBASIC17.59■□□□□ 0.41
VPS28Q9UK41 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS28Q9UK41 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS28Q9UK41 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
VPS28Q9UK41 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS28Q9UK41 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
VPS28Q9UK41 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC17.59■□□□□ 0.41
VPS28Q9UK41 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VPS28Q9UK41 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.58■□□□□ 0.41
VPS28Q9UK41 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
VPS28Q9UK41 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC17.58■□□□□ 0.41
VPS28Q9UK41 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC17.58■□□□□ 0.4
VPS28Q9UK41 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.58■□□□□ 0.4
VPS28Q9UK41 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS28Q9UK41 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VPS28Q9UK41 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.58■□□□□ 0.4
VPS28Q9UK41 AC007967.2-201ENST00000432613 625 ntBASIC17.58■□□□□ 0.4
VPS28Q9UK41 AL591424.1-201ENST00000442569 1213 ntBASIC17.58■□□□□ 0.4
VPS28Q9UK41 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
VPS28Q9UK41 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS28Q9UK41 TCAP-202ENST00000578283 583 ntTSL 5 BASIC17.58■□□□□ 0.4
VPS28Q9UK41 TERC-201ENST00000602385 541 ntBASIC17.58■□□□□ 0.4
VPS28Q9UK41 AC140113.2-201ENST00000604370 208 ntBASIC17.58■□□□□ 0.4
VPS28Q9UK41 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.58■□□□□ 0.4
VPS28Q9UK41 GGTLC5P-201ENST00000617623 998 ntBASIC17.58■□□□□ 0.4
VPS28Q9UK41 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
VPS28Q9UK41 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
VPS28Q9UK41 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
VPS28Q9UK41 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
VPS28Q9UK41 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
VPS28Q9UK41 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC17.58■□□□□ 0.4
VPS28Q9UK41 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
VPS28Q9UK41 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC17.58■□□□□ 0.4
VPS28Q9UK41 AL121761.2-201ENST00000598007 1648 ntBASIC17.58■□□□□ 0.4
VPS28Q9UK41 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 89 ms