Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PCDH9Q9HC56 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 NKTR-203ENST00000442970 646 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 AC093459.1-201ENST00000444567 481 ntTSL 3 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 PMPCAP1-201ENST00000508114 1576 ntBASIC17.68■□□□□ 0.42
PCDH9Q9HC56 TOLLIP-AS1-201ENST00000530897 939 ntBASIC17.68■□□□□ 0.42
PCDH9Q9HC56 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 AC073592.5-201ENST00000624854 528 ntBASIC17.68■□□□□ 0.42
PCDH9Q9HC56 AP000867.4-201ENST00000641616 219 ntBASIC17.68■□□□□ 0.42
PCDH9Q9HC56 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.68■□□□□ 0.42
PCDH9Q9HC56 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 OR6D1P-203ENST00000641209 4860 ntBASIC17.67■□□□□ 0.42
PCDH9Q9HC56 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 IFNL4P1-201ENST00000607083 540 ntBASIC17.67■□□□□ 0.42
PCDH9Q9HC56 AP001269.4-201ENST00000609611 512 ntBASIC17.67■□□□□ 0.42
PCDH9Q9HC56 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 GCAT-202ENST00000323205 1656 ntTSL 2 BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PCDH9Q9HC56 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 NFIX-209ENST00000587760 1487 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PCDH9Q9HC56 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PCDH9Q9HC56 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 24.9 ms