Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 PI4KAP1-204ENST00000612579 1703 ntBASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 AP002414.1-201ENST00000391405 1147 ntBASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 AP000347.1-202ENST00000435868 847 ntBASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 Z83851.2-201ENST00000609564 659 ntBASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC16.14■□□□□ 0.17
PTCHD1Q96NR3 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 AC108751.1-201ENST00000490852 363 ntBASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 AC145285.3-201ENST00000564603 959 ntBASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 AC106730.1-201ENST00000566722 1090 ntBASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 AC008667.4-201ENST00000607370 168 ntBASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 ATP6AP2-220ENST00000636970 1187 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
PTCHD1Q96NR3 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 AC009947.1-201ENST00000444350 727 ntBASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 IGHV3-65-201ENST00000523210 341 ntBASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 GGTLC5P-201ENST00000617623 998 ntBASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 CAND2-206ENST00000626378 333 ntTSL 5 BASIC16.12■□□□□ 0.17
PTCHD1Q96NR3 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 120.3 ms