Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 AGPAT2-205ENST00000538402 1357 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
ATG4AQ8WYN0 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 AL645728.1-201ENST00000366221 2101 ntBASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 AC006449.5-201ENST00000610658 2098 ntBASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 CROCCP1-201ENST00000426910 5675 ntBASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 CELF6-204ENST00000543764 1676 ntTSL 2 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 SMIM19-202ENST00000416469 691 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 NUS1P1-201ENST00000446295 882 ntBASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 CDV3-207ENST00000508481 661 ntTSL 3 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 AL049597.2-201ENST00000565575 961 ntBASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 AP002414.4-201ENST00000589764 1148 ntBASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 AC092364.2-201ENST00000596710 2692 ntBASIC17.75■□□□□ 0.43
ATG4AQ8WYN0 PMPCAP1-201ENST00000508114 1576 ntBASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 ISCU-203ENST00000431221 799 ntTSL 2 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 DRAXINP1-201ENST00000437611 948 ntBASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 LINC00265-3P-201ENST00000447588 903 ntBASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 KRT17P6-201ENST00000453795 1220 ntBASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 Z69720.1-201ENST00000601483 472 ntBASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.74■□□□□ 0.43
ATG4AQ8WYN0 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
ATG4AQ8WYN0 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
ATG4AQ8WYN0 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
ATG4AQ8WYN0 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
ATG4AQ8WYN0 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC17.73■□□□□ 0.43
ATG4AQ8WYN0 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
ATG4AQ8WYN0 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms