Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC17.13■□□□□ 0.33
HDDC3Q8N4P3 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 DAD1-205ENST00000543337 501 ntTSL 3 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 GOLGA6L17P-202ENST00000614358 1398 ntBASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
HDDC3Q8N4P3 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 AC092919.2-201ENST00000623631 1645 ntBASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 AC007613.1-201ENST00000572811 2597 ntBASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 AL139400.1-201ENST00000366220 510 ntBASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 HLA-J-203ENST00000494367 1087 ntBASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 NMU-203ENST00000507338 658 ntTSL 3 BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 AC107918.2-201ENST00000530817 355 ntBASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 AC092902.6-201ENST00000641783 218 ntBASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
HDDC3Q8N4P3 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 FALEC-201ENST00000416894 566 ntTSL 3 BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 FAM86GP-201ENST00000448322 971 ntBASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
HDDC3Q8N4P3 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms