Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC11.33□□□□□ -0.6
VPS13DQ5THJ4 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC11.33□□□□□ -0.6
VPS13DQ5THJ4 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
VPS13DQ5THJ4 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 AC245100.3-201ENST00000441281 285 ntBASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 IFT20-216ENST00000588477 774 ntTSL 5 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 RNA5-8SN1-201ENST00000610460 153 ntBASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 RNA5-8SN5-202ENST00000612463 153 ntBASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 RNA5-8SN4-201ENST00000613359 153 ntBASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 RNA5-8SN5-201ENST00000619471 153 ntBASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 BTBD7P1-201ENST00000447253 1453 ntBASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 AC007541.1-201ENST00000570282 1469 ntBASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 AC009163.2-201ENST00000460606 2125 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 AL512384.1-201ENST00000406683 331 ntBASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 MIR6787-201ENST00000616675 61 ntBASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 NME9-203ENST00000383180 2133 ntTSL 2 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 ANKRD19P-201ENST00000338192 862 ntBASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC11.32□□□□□ -0.6
VPS13DQ5THJ4 FST-202ENST00000396947 2538 ntTSL 5 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 RN7SL837P-201ENST00000463010 287 ntBASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 AC131009.4-201ENST00000624048 1740 ntBASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 AC106886.1-201ENST00000568660 600 ntBASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 MPDU1-223ENST00000582151 728 ntBASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC11.31□□□□□ -0.6
VPS13DQ5THJ4 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC11.31□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms