Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
PCDH1Q08174 AGGF1P2-201ENST00000426656 2106 ntBASIC16.51■□□□□ 0.23
PCDH1Q08174 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.51■□□□□ 0.23
PCDH1Q08174 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC16.5■□□□□ 0.23
PCDH1Q08174 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
PCDH1Q08174 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
PCDH1Q08174 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.5■□□□□ 0.23
PCDH1Q08174 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC16.5■□□□□ 0.23
PCDH1Q08174 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.5■□□□□ 0.23
PCDH1Q08174 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC16.5■□□□□ 0.23
PCDH1Q08174 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC16.5■□□□□ 0.23
PCDH1Q08174 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
PCDH1Q08174 SAPCD2P3-201ENST00000455031 850 ntBASIC16.5■□□□□ 0.23
PCDH1Q08174 KRT18P56-201ENST00000507275 550 ntBASIC16.5■□□□□ 0.23
PCDH1Q08174 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC16.5■□□□□ 0.23
PCDH1Q08174 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC16.5■□□□□ 0.23
PCDH1Q08174 PRELID1P1-202ENST00000567272 903 ntBASIC16.5■□□□□ 0.23
PCDH1Q08174 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC16.5■□□□□ 0.23
PCDH1Q08174 TERC-201ENST00000602385 541 ntBASIC16.5■□□□□ 0.23
PCDH1Q08174 AC064862.7-201ENST00000604520 867 ntBASIC16.5■□□□□ 0.23
PCDH1Q08174 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
PCDH1Q08174 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PCDH1Q08174 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC16.5■□□□□ 0.23
PCDH1Q08174 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.5■□□□□ 0.23
PCDH1Q08174 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
PCDH1Q08174 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.5■□□□□ 0.23
PCDH1Q08174 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
PCDH1Q08174 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 AC106886.4-201ENST00000623557 2502 ntBASIC16.5■□□□□ 0.23
PCDH1Q08174 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
PCDH1Q08174 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.5■□□□□ 0.23
PCDH1Q08174 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDH1Q08174 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDH1Q08174 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PCDH1Q08174 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDH1Q08174 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
PCDH1Q08174 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDH1Q08174 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDH1Q08174 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
PCDH1Q08174 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDH1Q08174 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC16.49■□□□□ 0.23
PCDH1Q08174 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.49■□□□□ 0.23
PCDH1Q08174 SCARNA2-201ENST00000458748 420 ntBASIC16.49■□□□□ 0.23
PCDH1Q08174 IDH3B-206ENST00000474315 1279 ntAPPRIS ALT1 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 AP002490.2-201ENST00000524791 560 ntBASIC16.49■□□□□ 0.23
PCDH1Q08174 SDHD-206ENST00000528182 754 ntTSL 3 BASIC16.49■□□□□ 0.23
PCDH1Q08174 SART3-203ENST00000546611 1184 ntBASIC16.49■□□□□ 0.23
PCDH1Q08174 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.49■□□□□ 0.23
PCDH1Q08174 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.49■□□□□ 0.23
PCDH1Q08174 AC008608.2-201ENST00000606089 416 ntBASIC16.49■□□□□ 0.23
PCDH1Q08174 AC004706.3-202ENST00000621574 984 ntBASIC16.49■□□□□ 0.23
PCDH1Q08174 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
PCDH1Q08174 AL139384.1-201ENST00000612143 3047 ntBASIC16.49■□□□□ 0.23
PCDH1Q08174 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms