Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC17.88■□□□□ 0.45
HDAC4P56524 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
HDAC4P56524 RPS2P1-201ENST00000434010 821 ntBASIC17.88■□□□□ 0.45
HDAC4P56524 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.88■□□□□ 0.45
HDAC4P56524 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.88■□□□□ 0.45
HDAC4P56524 HNRNPDP1-201ENST00000439535 754 ntBASIC17.88■□□□□ 0.45
HDAC4P56524 FAAHP1-202ENST00000446499 1238 ntBASIC17.88■□□□□ 0.45
HDAC4P56524 FAM197Y8-203ENST00000450145 560 ntBASIC17.88■□□□□ 0.45
HDAC4P56524 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC17.88■□□□□ 0.45
HDAC4P56524 AC073648.2-201ENST00000510116 352 ntBASIC17.88■□□□□ 0.45
HDAC4P56524 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.88■□□□□ 0.45
HDAC4P56524 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
HDAC4P56524 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.88■□□□□ 0.45
HDAC4P56524 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.88■□□□□ 0.45
HDAC4P56524 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
HDAC4P56524 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
HDAC4P56524 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 GAL3ST4-201ENST00000360039 2537 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
HDAC4P56524 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC17.87■□□□□ 0.45
HDAC4P56524 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 TNRC18P3-201ENST00000441896 2691 ntBASIC17.87■□□□□ 0.45
HDAC4P56524 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
HDAC4P56524 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
HDAC4P56524 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
HDAC4P56524 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC17.87■□□□□ 0.45
HDAC4P56524 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.87■□□□□ 0.45
HDAC4P56524 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.87■□□□□ 0.45
HDAC4P56524 LAGE3P1-201ENST00000425356 484 ntBASIC17.87■□□□□ 0.45
HDAC4P56524 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.87■□□□□ 0.45
HDAC4P56524 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.87■□□□□ 0.45
HDAC4P56524 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.87■□□□□ 0.45
HDAC4P56524 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
HDAC4P56524 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC17.87■□□□□ 0.45
HDAC4P56524 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC17.87■□□□□ 0.45
HDAC4P56524 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.87■□□□□ 0.45
HDAC4P56524 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 AC148477.8-201ENST00000624298 468 ntBASIC17.87■□□□□ 0.45
HDAC4P56524 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 MAGI3-201ENST00000307546 6430 ntTSL 5 BASIC17.87■□□□□ 0.45
HDAC4P56524 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.87■□□□□ 0.45
HDAC4P56524 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.87■□□□□ 0.45
HDAC4P56524 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.87■□□□□ 0.45
HDAC4P56524 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
HDAC4P56524 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
HDAC4P56524 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC17.86■□□□□ 0.45
HDAC4P56524 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC4P56524 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC4P56524 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.86■□□□□ 0.45
HDAC4P56524 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC4P56524 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC17.86■□□□□ 0.45
HDAC4P56524 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC4P56524 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC4P56524 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC4P56524 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.86■□□□□ 0.45
HDAC4P56524 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC17.86■□□□□ 0.45
HDAC4P56524 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.86■□□□□ 0.45
HDAC4P56524 KRT18P67-201ENST00000432816 1264 ntBASIC17.86■□□□□ 0.45
HDAC4P56524 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC17.86■□□□□ 0.45
HDAC4P56524 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.86■□□□□ 0.45
HDAC4P56524 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.86■□□□□ 0.45
HDAC4P56524 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17.86■□□□□ 0.45
HDAC4P56524 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC4P56524 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC17.86■□□□□ 0.45
HDAC4P56524 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC4P56524 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
HDAC4P56524 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.86■□□□□ 0.45
HDAC4P56524 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC17.86■□□□□ 0.45
HDAC4P56524 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC4P56524 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
HDAC4P56524 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC4P56524 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
HDAC4P56524 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC17.86■□□□□ 0.45
HDAC4P56524 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
HDAC4P56524 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
HDAC4P56524 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms