Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCPP55072 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC18.33■□□□□ 0.52
VCPP55072 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
VCPP55072 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC18.33■□□□□ 0.52
VCPP55072 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCPP55072 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VCPP55072 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
VCPP55072 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.33■□□□□ 0.52
VCPP55072 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCPP55072 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC18.33■□□□□ 0.52
VCPP55072 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
VCPP55072 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VCPP55072 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VCPP55072 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
VCPP55072 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC18.33■□□□□ 0.52
VCPP55072 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
VCPP55072 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC18.32■□□□□ 0.52
VCPP55072 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
VCPP55072 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
VCPP55072 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC18.32■□□□□ 0.52
VCPP55072 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.32■□□□□ 0.52
VCPP55072 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.32■□□□□ 0.52
VCPP55072 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCPP55072 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.32■□□□□ 0.52
VCPP55072 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCPP55072 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VCPP55072 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC18.32■□□□□ 0.52
VCPP55072 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.32■□□□□ 0.52
VCPP55072 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.32■□□□□ 0.52
VCPP55072 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC18.32■□□□□ 0.52
VCPP55072 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC18.32■□□□□ 0.52
VCPP55072 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCPP55072 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCPP55072 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC18.32■□□□□ 0.52
VCPP55072 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCPP55072 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCPP55072 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCPP55072 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VCPP55072 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCPP55072 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VCPP55072 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
VCPP55072 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
VCPP55072 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC18.31■□□□□ 0.52
VCPP55072 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
VCPP55072 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC18.31■□□□□ 0.52
VCPP55072 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
VCPP55072 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
VCPP55072 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 CD99-202ENST00000381180 530 ntTSL 2 BASIC18.31■□□□□ 0.52
VCPP55072 CEND1P1-201ENST00000451006 455 ntBASIC18.31■□□□□ 0.52
VCPP55072 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.31■□□□□ 0.52
VCPP55072 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.31■□□□□ 0.52
VCPP55072 TAF8-206ENST00000472818 719 ntTSL 2 BASIC18.31■□□□□ 0.52
VCPP55072 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC18.31■□□□□ 0.52
VCPP55072 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC18.31■□□□□ 0.52
VCPP55072 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.31■□□□□ 0.52
VCPP55072 AC093512.1-201ENST00000617969 520 ntBASIC18.31■□□□□ 0.52
VCPP55072 AL035252.4-201ENST00000624174 288 ntBASIC18.31■□□□□ 0.52
VCPP55072 AC005593.1-201ENST00000624894 515 ntBASIC18.31■□□□□ 0.52
VCPP55072 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
VCPP55072 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VCPP55072 ELL2P1-201ENST00000413990 1906 ntBASIC18.31■□□□□ 0.52
VCPP55072 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VCPP55072 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.31■□□□□ 0.52
VCPP55072 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.3■□□□□ 0.52
VCPP55072 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC18.3■□□□□ 0.52
VCPP55072 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC18.3■□□□□ 0.52
VCPP55072 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
VCPP55072 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC18.3■□□□□ 0.52
VCPP55072 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 AC096633.1-201ENST00000422446 749 ntBASIC18.3■□□□□ 0.52
VCPP55072 AC005034.1-201ENST00000426657 489 ntBASIC18.3■□□□□ 0.52
VCPP55072 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC18.3■□□□□ 0.52
VCPP55072 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.3■□□□□ 0.52
VCPP55072 RBM7-207ENST00000544582 692 ntTSL 3 BASIC18.3■□□□□ 0.52
VCPP55072 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC18.3■□□□□ 0.52
VCPP55072 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC18.3■□□□□ 0.52
VCPP55072 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VCPP55072 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 74.8 ms