Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.8■□□□□ 0.44
EPHB3P54753 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC17.8■□□□□ 0.44
EPHB3P54753 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
EPHB3P54753 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.8■□□□□ 0.44
EPHB3P54753 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
EPHB3P54753 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
EPHB3P54753 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
EPHB3P54753 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC17.79■□□□□ 0.44
EPHB3P54753 AL138688.1-201ENST00000624851 1594 ntBASIC17.79■□□□□ 0.44
EPHB3P54753 PRSS35-201ENST00000369700 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
EPHB3P54753 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
EPHB3P54753 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
EPHB3P54753 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.79■□□□□ 0.44
EPHB3P54753 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC17.79■□□□□ 0.44
EPHB3P54753 HCG4-201ENST00000418983 998 ntBASIC17.79■□□□□ 0.44
EPHB3P54753 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC17.79■□□□□ 0.44
EPHB3P54753 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
EPHB3P54753 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.79■□□□□ 0.44
EPHB3P54753 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC17.79■□□□□ 0.44
EPHB3P54753 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
EPHB3P54753 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC17.79■□□□□ 0.44
EPHB3P54753 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
EPHB3P54753 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC17.79■□□□□ 0.44
EPHB3P54753 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC17.79■□□□□ 0.44
EPHB3P54753 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
EPHB3P54753 AC025678.2-201ENST00000562061 970 ntBASIC17.79■□□□□ 0.44
EPHB3P54753 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC17.79■□□□□ 0.44
EPHB3P54753 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.79■□□□□ 0.44
EPHB3P54753 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
EPHB3P54753 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC17.79■□□□□ 0.44
EPHB3P54753 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
EPHB3P54753 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC17.79■□□□□ 0.44
EPHB3P54753 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.79■□□□□ 0.44
EPHB3P54753 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
EPHB3P54753 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
EPHB3P54753 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC17.79■□□□□ 0.44
EPHB3P54753 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC17.79■□□□□ 0.44
EPHB3P54753 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
EPHB3P54753 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
EPHB3P54753 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
EPHB3P54753 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
EPHB3P54753 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
EPHB3P54753 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
EPHB3P54753 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.79■□□□□ 0.44
EPHB3P54753 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.78■□□□□ 0.44
EPHB3P54753 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
EPHB3P54753 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.78■□□□□ 0.44
EPHB3P54753 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
EPHB3P54753 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
EPHB3P54753 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
EPHB3P54753 AC134043.2-201ENST00000624206 2238 ntBASIC17.78■□□□□ 0.44
EPHB3P54753 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
EPHB3P54753 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
EPHB3P54753 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
EPHB3P54753 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
EPHB3P54753 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
EPHB3P54753 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
EPHB3P54753 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
EPHB3P54753 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
EPHB3P54753 TFAMP1-201ENST00000412727 736 ntBASIC17.78■□□□□ 0.44
EPHB3P54753 AC005237.2-201ENST00000434368 219 ntBASIC17.78■□□□□ 0.44
EPHB3P54753 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC17.78■□□□□ 0.44
EPHB3P54753 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
EPHB3P54753 NDUFAF5-203ENST00000463598 991 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
EPHB3P54753 HLA-J-203ENST00000494367 1087 ntBASIC17.78■□□□□ 0.44
EPHB3P54753 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC17.78■□□□□ 0.44
EPHB3P54753 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC17.78■□□□□ 0.44
EPHB3P54753 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC17.78■□□□□ 0.44
EPHB3P54753 RARRES2P8-201ENST00000566335 367 ntBASIC17.78■□□□□ 0.44
EPHB3P54753 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.78■□□□□ 0.44
EPHB3P54753 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
EPHB3P54753 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
EPHB3P54753 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
EPHB3P54753 NEFHP1-201ENST00000412845 2629 ntBASIC17.78■□□□□ 0.44
EPHB3P54753 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
EPHB3P54753 TOP3BP1-201ENST00000420768 1380 ntBASIC17.78■□□□□ 0.44
EPHB3P54753 GNAS-203ENST00000306120 1878 ntBASIC17.78■□□□□ 0.44
EPHB3P54753 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
EPHB3P54753 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
EPHB3P54753 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
EPHB3P54753 AKAP8P1-201ENST00000434743 1349 ntBASIC17.77■□□□□ 0.44
EPHB3P54753 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.77■□□□□ 0.44
EPHB3P54753 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
EPHB3P54753 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC17.77■□□□□ 0.44
EPHB3P54753 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
EPHB3P54753 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
EPHB3P54753 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.77■□□□□ 0.44
EPHB3P54753 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC17.77■□□□□ 0.44
EPHB3P54753 AL592309.1-201ENST00000443127 649 ntBASIC17.77■□□□□ 0.44
EPHB3P54753 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
EPHB3P54753 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC17.77■□□□□ 0.44
EPHB3P54753 KRT8P48-201ENST00000515599 1220 ntBASIC17.77■□□□□ 0.44
EPHB3P54753 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC17.77■□□□□ 0.44
EPHB3P54753 AC091167.2-201ENST00000579581 588 ntBASIC17.77■□□□□ 0.44
EPHB3P54753 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.77■□□□□ 0.44
EPHB3P54753 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC17.77■□□□□ 0.44
EPHB3P54753 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC17.77■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms