Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 MIR1909-201ENST00000411312 80 ntBASIC18.09■□□□□ 0.49
COL4A4P53420 GPR53P-205ENST00000457298 1084 ntBASIC18.09■□□□□ 0.49
COL4A4P53420 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 LINC01225-203ENST00000563550 1244 ntBASIC18.09■□□□□ 0.49
COL4A4P53420 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.09■□□□□ 0.49
COL4A4P53420 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
COL4A4P53420 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
COL4A4P53420 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A4P53420 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.49
COL4A4P53420 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.08■□□□□ 0.49
COL4A4P53420 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
COL4A4P53420 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC18.08■□□□□ 0.49
COL4A4P53420 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A4P53420 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A4P53420 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
COL4A4P53420 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A4P53420 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
COL4A4P53420 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
COL4A4P53420 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A4P53420 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A4P53420 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A4P53420 HMGA1P7-201ENST00000406908 502 ntBASIC18.08■□□□□ 0.48
COL4A4P53420 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A4P53420 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A4P53420 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A4P53420 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.08■□□□□ 0.48
COL4A4P53420 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A4P53420 AL590560.3-201ENST00000623350 461 ntBASIC18.08■□□□□ 0.48
COL4A4P53420 AC004840.1-201ENST00000636359 365 ntBASIC18.08■□□□□ 0.48
COL4A4P53420 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
COL4A4P53420 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A4P53420 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A4P53420 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
COL4A4P53420 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A4P53420 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A4P53420 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A4P53420 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
COL4A4P53420 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC18.07■□□□□ 0.48
COL4A4P53420 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A4P53420 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A4P53420 AC079776.1-201ENST00000401540 1152 ntBASIC18.07■□□□□ 0.48
COL4A4P53420 NME2P1-201ENST00000426182 414 ntBASIC18.07■□□□□ 0.48
COL4A4P53420 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A4P53420 IGHV3-62-201ENST00000520057 340 ntBASIC18.07■□□□□ 0.48
COL4A4P53420 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.07■□□□□ 0.48
COL4A4P53420 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC18.07■□□□□ 0.48
COL4A4P53420 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.07■□□□□ 0.48
COL4A4P53420 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC18.07■□□□□ 0.48
COL4A4P53420 AC004233.3-201ENST00000607794 1269 ntBASIC18.07■□□□□ 0.48
COL4A4P53420 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
COL4A4P53420 WNT5B-202ENST00000397196 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A4P53420 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
COL4A4P53420 AC016396.2-201ENST00000562575 1417 ntBASIC18.07■□□□□ 0.48
COL4A4P53420 AL645608.8-201ENST00000606034 2086 ntBASIC18.07■□□□□ 0.48
COL4A4P53420 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A4P53420 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.07■□□□□ 0.48
COL4A4P53420 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A4P53420 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
COL4A4P53420 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.07■□□□□ 0.48
COL4A4P53420 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
COL4A4P53420 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A4P53420 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
COL4A4P53420 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.06■□□□□ 0.48
COL4A4P53420 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A4P53420 ARSEP1-201ENST00000420443 635 ntBASIC18.06■□□□□ 0.48
COL4A4P53420 AL512638.1-201ENST00000457493 794 ntBASIC18.06■□□□□ 0.48
COL4A4P53420 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A4P53420 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC18.06■□□□□ 0.48
COL4A4P53420 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC18.06■□□□□ 0.48
COL4A4P53420 AC140912.1-201ENST00000577171 1054 ntBASIC18.06■□□□□ 0.48
COL4A4P53420 MIR4453-201ENST00000584019 89 ntBASIC18.06■□□□□ 0.48
COL4A4P53420 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC18.06■□□□□ 0.48
COL4A4P53420 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
COL4A4P53420 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
COL4A4P53420 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A4P53420 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A4P53420 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A4P53420 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A4P53420 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
COL4A4P53420 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
COL4A4P53420 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
COL4A4P53420 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC18.06■□□□□ 0.48
COL4A4P53420 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.06■□□□□ 0.48
COL4A4P53420 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC18.06■□□□□ 0.48
COL4A4P53420 AC004790.1-201ENST00000612686 536 ntBASIC18.06■□□□□ 0.48
COL4A4P53420 AL138828.2-201ENST00000615812 383 ntBASIC18.06■□□□□ 0.48
COL4A4P53420 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
COL4A4P53420 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.05■□□□□ 0.48
COL4A4P53420 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
COL4A4P53420 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.05■□□□□ 0.48
COL4A4P53420 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.05■□□□□ 0.48
COL4A4P53420 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
COL4A4P53420 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms