Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN9P43378 AC002310.6-201ENST00000624451 1377 ntBASIC17.76■□□□□ 0.43
PTPN9P43378 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN9P43378 FCHO1-201ENST00000252771 3118 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
PTPN9P43378 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
PTPN9P43378 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 AC106886.4-201ENST00000623557 2502 ntBASIC17.75■□□□□ 0.43
PTPN9P43378 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 PCDHB17P-201ENST00000539533 2393 ntBASIC17.75■□□□□ 0.43
PTPN9P43378 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 FBXO24-206ENST00000468962 1901 ntTSL 2 BASIC17.75■□□□□ 0.43
PTPN9P43378 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 ODF3B-204ENST00000405135 917 ntTSL 5 BASIC17.75■□□□□ 0.43
PTPN9P43378 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC17.75■□□□□ 0.43
PTPN9P43378 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC17.75■□□□□ 0.43
PTPN9P43378 AC009078.2-202ENST00000463353 338 ntBASIC17.75■□□□□ 0.43
PTPN9P43378 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.75■□□□□ 0.43
PTPN9P43378 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC17.75■□□□□ 0.43
PTPN9P43378 RIN3-211ENST00000557762 517 ntTSL 3 BASIC17.75■□□□□ 0.43
PTPN9P43378 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.75■□□□□ 0.43
PTPN9P43378 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC17.75■□□□□ 0.43
PTPN9P43378 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.75■□□□□ 0.43
PTPN9P43378 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
PTPN9P43378 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 AC009053.2-201ENST00000563701 2365 ntBASIC17.75■□□□□ 0.43
PTPN9P43378 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
PTPN9P43378 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC17.75■□□□□ 0.43
PTPN9P43378 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
PTPN9P43378 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC17.74■□□□□ 0.43
PTPN9P43378 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
PTPN9P43378 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.74■□□□□ 0.43
PTPN9P43378 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.74■□□□□ 0.43
PTPN9P43378 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PTPN9P43378 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PTPN9P43378 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN9P43378 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN9P43378 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN9P43378 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
PTPN9P43378 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.74■□□□□ 0.43
PTPN9P43378 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN9P43378 TM2D1-201ENST00000294613 1250 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN9P43378 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN9P43378 TM2D1-204ENST00000371180 1248 ntTSL 5 BASIC17.74■□□□□ 0.43
PTPN9P43378 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN9P43378 SLC25A6P2-201ENST00000497974 877 ntBASIC17.74■□□□□ 0.43
PTPN9P43378 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
PTPN9P43378 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.74■□□□□ 0.43
PTPN9P43378 AP001005.1-201ENST00000571755 1248 ntBASIC17.74■□□□□ 0.43
PTPN9P43378 TM2D1-212ENST00000606498 969 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
PTPN9P43378 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.74■□□□□ 0.43
PTPN9P43378 REXO1L3P-201ENST00000622202 1288 ntBASIC17.74■□□□□ 0.43
PTPN9P43378 AC005593.1-201ENST00000624894 515 ntBASIC17.74■□□□□ 0.43
PTPN9P43378 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
PTPN9P43378 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC17.74■□□□□ 0.43
PTPN9P43378 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN9P43378 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.74■□□□□ 0.43
PTPN9P43378 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
PTPN9P43378 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC17.74■□□□□ 0.43
PTPN9P43378 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN9P43378 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
PTPN9P43378 TOP3BP1-201ENST00000420768 1380 ntBASIC17.74■□□□□ 0.43
PTPN9P43378 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN9P43378 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
PTPN9P43378 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN9P43378 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN9P43378 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
PTPN9P43378 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
PTPN9P43378 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
PTPN9P43378 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC17.73■□□□□ 0.43
PTPN9P43378 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.73■□□□□ 0.43
PTPN9P43378 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC17.73■□□□□ 0.43
PTPN9P43378 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
PTPN9P43378 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.73■□□□□ 0.43
PTPN9P43378 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.73■□□□□ 0.43
PTPN9P43378 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC17.73■□□□□ 0.43
PTPN9P43378 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC17.73■□□□□ 0.43
PTPN9P43378 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC17.73■□□□□ 0.43
PTPN9P43378 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC17.73■□□□□ 0.43
PTPN9P43378 AC117500.6-201ENST00000624871 588 ntBASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms