Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.79■□□□□ 0.76
ERCC3P19447 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
ERCC3P19447 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
ERCC3P19447 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 REXO1L11P-201ENST00000620964 1927 ntBASIC19.79■□□□□ 0.76
ERCC3P19447 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC19.79■□□□□ 0.76
ERCC3P19447 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 TSEN15P1-201ENST00000423257 515 ntBASIC19.79■□□□□ 0.76
ERCC3P19447 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC19.79■□□□□ 0.76
ERCC3P19447 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC19.79■□□□□ 0.76
ERCC3P19447 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC19.79■□□□□ 0.76
ERCC3P19447 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.79■□□□□ 0.76
ERCC3P19447 AC068137.2-201ENST00000605408 478 ntBASIC19.79■□□□□ 0.76
ERCC3P19447 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC19.79■□□□□ 0.76
ERCC3P19447 MED16-214ENST00000617672 554 ntTSL 5 BASIC19.79■□□□□ 0.76
ERCC3P19447 AC093028.1-201ENST00000622998 982 ntBASIC19.79■□□□□ 0.76
ERCC3P19447 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
ERCC3P19447 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC19.79■□□□□ 0.76
ERCC3P19447 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC19.79■□□□□ 0.76
ERCC3P19447 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC19.79■□□□□ 0.76
ERCC3P19447 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC19.79■□□□□ 0.76
ERCC3P19447 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
ERCC3P19447 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
ERCC3P19447 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.78■□□□□ 0.76
ERCC3P19447 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 NME9-203ENST00000383180 2133 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC3P19447 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC19.78■□□□□ 0.76
ERCC3P19447 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC3P19447 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC19.78■□□□□ 0.76
ERCC3P19447 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC3P19447 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.78■□□□□ 0.76
ERCC3P19447 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC3P19447 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 AL139400.1-201ENST00000366220 510 ntBASIC19.78■□□□□ 0.76
ERCC3P19447 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.78■□□□□ 0.76
ERCC3P19447 NABP1-203ENST00000409510 843 ntTSL 5 BASIC19.78■□□□□ 0.76
ERCC3P19447 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
ERCC3P19447 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.78■□□□□ 0.76
ERCC3P19447 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC19.78■□□□□ 0.76
ERCC3P19447 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC3P19447 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC3P19447 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
ERCC3P19447 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC19.78■□□□□ 0.76
ERCC3P19447 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC3P19447 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.78■□□□□ 0.76
ERCC3P19447 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC3P19447 AL513210.1-201ENST00000629608 234 ntBASIC19.78■□□□□ 0.76
ERCC3P19447 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC19.78■□□□□ 0.76
ERCC3P19447 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC3P19447 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC19.78■□□□□ 0.76
ERCC3P19447 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
ERCC3P19447 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC19.78■□□□□ 0.76
ERCC3P19447 LINC00896-202ENST00000609602 2128 ntBASIC19.78■□□□□ 0.76
ERCC3P19447 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.78■□□□□ 0.76
ERCC3P19447 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
ERCC3P19447 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC19.78■□□□□ 0.76
ERCC3P19447 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC3P19447 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC3P19447 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
ERCC3P19447 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC3P19447 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC3P19447 AC092919.2-201ENST00000623631 1645 ntBASIC19.77■□□□□ 0.76
ERCC3P19447 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC3P19447 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC3P19447 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC3P19447 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
ERCC3P19447 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC3P19447 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC3P19447 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC19.77■□□□□ 0.76
ERCC3P19447 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
ERCC3P19447 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.77■□□□□ 0.76
ERCC3P19447 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.77■□□□□ 0.76
ERCC3P19447 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms