Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.62■□□□□ 0.41
HMGA1P17096 LINC00628-201ENST00000628516 1289 ntBASIC17.62■□□□□ 0.41
HMGA1P17096 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HMGA1P17096 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGA1P17096 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC17.62■□□□□ 0.41
HMGA1P17096 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGA1P17096 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGA1P17096 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGA1P17096 AC092053.1-201ENST00000605787 1936 ntBASIC17.62■□□□□ 0.41
HMGA1P17096 AL021920.2-201ENST00000624828 1351 ntBASIC17.62■□□□□ 0.41
HMGA1P17096 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.62■□□□□ 0.41
HMGA1P17096 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
HMGA1P17096 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
HMGA1P17096 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC17.62■□□□□ 0.41
HMGA1P17096 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HMGA1P17096 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC17.62■□□□□ 0.41
HMGA1P17096 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.61■□□□□ 0.41
HMGA1P17096 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC17.61■□□□□ 0.41
HMGA1P17096 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 PPP1R9B-202ENST00000612501 4167 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HMGA1P17096 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HMGA1P17096 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HMGA1P17096 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HMGA1P17096 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC17.61■□□□□ 0.41
HMGA1P17096 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 AC005237.2-201ENST00000434368 219 ntBASIC17.61■□□□□ 0.41
HMGA1P17096 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 AC124947.2-201ENST00000547118 1133 ntBASIC17.61■□□□□ 0.41
HMGA1P17096 AC004449.1-201ENST00000564240 433 ntBASIC17.61■□□□□ 0.41
HMGA1P17096 MIR3909-201ENST00000579518 119 ntBASIC17.61■□□□□ 0.41
HMGA1P17096 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
HMGA1P17096 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17.61■□□□□ 0.41
HMGA1P17096 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HMGA1P17096 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.61■□□□□ 0.41
HMGA1P17096 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HMGA1P17096 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
HMGA1P17096 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGA1P17096 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC17.6■□□□□ 0.41
HMGA1P17096 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
HMGA1P17096 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC17.6■□□□□ 0.41
HMGA1P17096 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
HMGA1P17096 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
HMGA1P17096 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
HMGA1P17096 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.6■□□□□ 0.41
HMGA1P17096 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.6■□□□□ 0.41
HMGA1P17096 LSM12-202ENST00000585388 942 ntTSL 3 BASIC17.6■□□□□ 0.41
HMGA1P17096 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
HMGA1P17096 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.6■□□□□ 0.41
HMGA1P17096 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.6■□□□□ 0.41
HMGA1P17096 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGA1P17096 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.6■□□□□ 0.41
HMGA1P17096 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGA1P17096 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
HMGA1P17096 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
HMGA1P17096 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
HMGA1P17096 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGA1P17096 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.6■□□□□ 0.41
HMGA1P17096 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HMGA1P17096 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC17.6■□□□□ 0.41
HMGA1P17096 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
HMGA1P17096 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.59■□□□□ 0.41
HMGA1P17096 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC17.59■□□□□ 0.41
HMGA1P17096 AC108860.2-201ENST00000562760 2183 ntBASIC17.59■□□□□ 0.41
HMGA1P17096 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HMGA1P17096 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms