Protein–RNA interactions for Protein: P04085

PDGFA, Platelet-derived growth factor subunit A, humanhuman

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFAP04085 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDGFAP04085 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
PDGFAP04085 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDGFAP04085 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDGFAP04085 MRPL20P1-201ENST00000400819 433 ntBASIC16.03■□□□□ 0.16
PDGFAP04085 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.03■□□□□ 0.16
PDGFAP04085 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC16.03■□□□□ 0.16
PDGFAP04085 FAM58CP-201ENST00000435741 640 ntBASIC16.03■□□□□ 0.16
PDGFAP04085 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.03■□□□□ 0.16
PDGFAP04085 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.03■□□□□ 0.16
PDGFAP04085 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PDGFAP04085 AC096734.2-201ENST00000562054 433 ntBASIC16.03■□□□□ 0.16
PDGFAP04085 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.03■□□□□ 0.16
PDGFAP04085 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.03■□□□□ 0.16
PDGFAP04085 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC16.03■□□□□ 0.16
PDGFAP04085 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC16.03■□□□□ 0.16
PDGFAP04085 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.03■□□□□ 0.16
PDGFAP04085 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDGFAP04085 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PDGFAP04085 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDGFAP04085 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDGFAP04085 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PDGFAP04085 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDGFAP04085 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.03■□□□□ 0.16
PDGFAP04085 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PDGFAP04085 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC16.02■□□□□ 0.16
PDGFAP04085 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 ENOPH1-201ENST00000273920 2025 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC16.02■□□□□ 0.16
PDGFAP04085 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
PDGFAP04085 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
PDGFAP04085 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.02■□□□□ 0.16
PDGFAP04085 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC16.02■□□□□ 0.16
PDGFAP04085 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC16.02■□□□□ 0.16
PDGFAP04085 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.02■□□□□ 0.16
PDGFAP04085 CFL1-212ENST00000531413 636 ntTSL 3 BASIC16.02■□□□□ 0.16
PDGFAP04085 AC109462.3-201ENST00000573934 613 ntBASIC16.02■□□□□ 0.16
PDGFAP04085 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
PDGFAP04085 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.02■□□□□ 0.16
PDGFAP04085 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.02■□□□□ 0.16
PDGFAP04085 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
PDGFAP04085 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PDGFAP04085 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
PDGFAP04085 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PDGFAP04085 AL031598.1-201ENST00000561511 1773 ntBASIC16.02■□□□□ 0.15
PDGFAP04085 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.02■□□□□ 0.15
PDGFAP04085 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PDGFAP04085 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
PDGFAP04085 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
PDGFAP04085 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
PDGFAP04085 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PDGFAP04085 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PDGFAP04085 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PDGFAP04085 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.02■□□□□ 0.15
PDGFAP04085 AC068418.2-201ENST00000577309 3703 ntBASIC16.02■□□□□ 0.15
PDGFAP04085 FAM234A-202ENST00000301679 1936 ntTSL 2 BASIC16.02■□□□□ 0.15
PDGFAP04085 ABALON-201ENST00000629058 1903 ntBASIC16.02■□□□□ 0.15
PDGFAP04085 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
PDGFAP04085 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PDGFAP04085 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 NKIRAS1-202ENST00000412028 1605 ntAPPRIS ALT1 TSL 5 BASIC16.01■□□□□ 0.15
PDGFAP04085 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PDGFAP04085 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PDGFAP04085 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
PDGFAP04085 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PDGFAP04085 TSEN15P1-201ENST00000423257 515 ntBASIC16.01■□□□□ 0.15
PDGFAP04085 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.01■□□□□ 0.15
PDGFAP04085 SMN2-210ENST00000511812 867 ntTSL 2 BASIC16.01■□□□□ 0.15
PDGFAP04085 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.01■□□□□ 0.15
PDGFAP04085 CCND1-203ENST00000536559 553 ntTSL 3 BASIC16.01■□□□□ 0.15
PDGFAP04085 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PDGFAP04085 CD63-210ENST00000550776 870 ntTSL 5 BASIC16.01■□□□□ 0.15
PDGFAP04085 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms