Protein–RNA interactions for Protein: P04004

VTN, Vitronectin, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTNP04004 EIF5-201ENST00000216554 5945 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 AL162586.1-201ENST00000439298 2055 ntTSL 2 BASIC18.67■□□□□ 0.58
VTNP04004 PODNL1-201ENST00000254320 1859 ntTSL 2 BASIC18.67■□□□□ 0.58
VTNP04004 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC18.67■□□□□ 0.58
VTNP04004 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.67■□□□□ 0.58
VTNP04004 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC18.67■□□□□ 0.58
VTNP04004 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
VTNP04004 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.67■□□□□ 0.58
VTNP04004 HMGN1P19-201ENST00000436976 333 ntBASIC18.67■□□□□ 0.58
VTNP04004 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.67■□□□□ 0.58
VTNP04004 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
VTNP04004 AC022145.2-201ENST00000598203 171 ntBASIC18.67■□□□□ 0.58
VTNP04004 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC18.67■□□□□ 0.58
VTNP04004 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC18.67■□□□□ 0.58
VTNP04004 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
VTNP04004 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
VTNP04004 RPS6KA5-201ENST00000418736 2249 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
VTNP04004 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC18.67■□□□□ 0.58
VTNP04004 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
VTNP04004 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC18.66■□□□□ 0.58
VTNP04004 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
VTNP04004 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VTNP04004 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC18.66■□□□□ 0.58
VTNP04004 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VTNP04004 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VTNP04004 NUAK1-201ENST00000261402 6828 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VTNP04004 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VTNP04004 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VTNP04004 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VTNP04004 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC18.66■□□□□ 0.58
VTNP04004 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VTNP04004 AC012569.1-201ENST00000591191 1524 ntBASIC18.66■□□□□ 0.58
VTNP04004 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VTNP04004 AL139400.1-201ENST00000366220 510 ntBASIC18.66■□□□□ 0.58
VTNP04004 AL355306.1-201ENST00000415580 579 ntBASIC18.66■□□□□ 0.58
VTNP04004 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.66■□□□□ 0.58
VTNP04004 PON3-203ENST00000427422 894 ntTSL 3 BASIC18.66■□□□□ 0.58
VTNP04004 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VTNP04004 TIMM8BP1-201ENST00000452384 211 ntBASIC18.66■□□□□ 0.58
VTNP04004 AC004835.2-201ENST00000603762 682 ntBASIC18.66■□□□□ 0.58
VTNP04004 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC18.66■□□□□ 0.58
VTNP04004 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC18.66■□□□□ 0.58
VTNP04004 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC18.66■□□□□ 0.58
VTNP04004 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VTNP04004 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
VTNP04004 AL121761.2-201ENST00000598007 1648 ntBASIC18.66■□□□□ 0.58
VTNP04004 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VTNP04004 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC18.66■□□□□ 0.58
VTNP04004 GOLGA6L17P-202ENST00000614358 1398 ntBASIC18.66■□□□□ 0.58
VTNP04004 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
VTNP04004 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
VTNP04004 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
VTNP04004 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VTNP04004 PP12613-201ENST00000424958 2230 ntBASIC18.65■□□□□ 0.58
VTNP04004 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
VTNP04004 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VTNP04004 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
VTNP04004 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VTNP04004 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC18.65■□□□□ 0.58
VTNP04004 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
VTNP04004 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC18.65■□□□□ 0.58
VTNP04004 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC18.65■□□□□ 0.58
VTNP04004 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC18.65■□□□□ 0.58
VTNP04004 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
VTNP04004 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.65■□□□□ 0.58
VTNP04004 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VTNP04004 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VTNP04004 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
VTNP04004 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
VTNP04004 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
VTNP04004 LINC00957-202ENST00000441052 2590 ntTSL 2 BASIC18.65■□□□□ 0.58
VTNP04004 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
VTNP04004 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
VTNP04004 FRMD8P1-201ENST00000440433 1524 ntBASIC18.64■□□□□ 0.58
VTNP04004 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC18.64■□□□□ 0.58
VTNP04004 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VTNP04004 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VTNP04004 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC18.64■□□□□ 0.57
VTNP04004 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC18.64■□□□□ 0.57
VTNP04004 SLC22A20-204ENST00000530038 1673 ntBASIC18.64■□□□□ 0.57
VTNP04004 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VTNP04004 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VTNP04004 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VTNP04004 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VTNP04004 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VTNP04004 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VTNP04004 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms