Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 COX11-210ENST00000639671 696 ntBASIC17.02■□□□□ 0.32
PDGFBP01127 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC17.02■□□□□ 0.32
PDGFBP01127 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
PDGFBP01127 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PDGFBP01127 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PDGFBP01127 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PDGFBP01127 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
PDGFBP01127 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
PDGFBP01127 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.02■□□□□ 0.31
PDGFBP01127 AL391825.1-201ENST00000457671 1364 ntBASIC17.02■□□□□ 0.31
PDGFBP01127 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
PDGFBP01127 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.31
PDGFBP01127 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC17.01■□□□□ 0.31
PDGFBP01127 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.01■□□□□ 0.31
PDGFBP01127 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.01■□□□□ 0.31
PDGFBP01127 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
PDGFBP01127 RPF1-202ENST00000370656 724 ntTSL 2 BASIC17.01■□□□□ 0.31
PDGFBP01127 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC17.01■□□□□ 0.31
PDGFBP01127 CCL25-203ENST00000390669 924 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 OSM-203ENST00000403463 464 ntTSL 3 BASIC17.01■□□□□ 0.31
PDGFBP01127 CENPM-206ENST00000407253 818 ntTSL 2 BASIC17.01■□□□□ 0.31
PDGFBP01127 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.01■□□□□ 0.31
PDGFBP01127 AC004945.1-201ENST00000416738 983 ntBASIC17.01■□□□□ 0.31
PDGFBP01127 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC17.01■□□□□ 0.31
PDGFBP01127 HCG4-201ENST00000418983 998 ntBASIC17.01■□□□□ 0.31
PDGFBP01127 KRT223P-202ENST00000449164 1292 ntBASIC17.01■□□□□ 0.31
PDGFBP01127 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC17.01■□□□□ 0.31
PDGFBP01127 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.01■□□□□ 0.31
PDGFBP01127 SPDYE18-201ENST00000510091 1050 ntBASIC17.01■□□□□ 0.31
PDGFBP01127 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC17.01■□□□□ 0.31
PDGFBP01127 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC17.01■□□□□ 0.31
PDGFBP01127 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC17.01■□□□□ 0.31
PDGFBP01127 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.01■□□□□ 0.31
PDGFBP01127 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC17.01■□□□□ 0.31
PDGFBP01127 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.01■□□□□ 0.31
PDGFBP01127 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
PDGFBP01127 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PDGFBP01127 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PDGFBP01127 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC17■□□□□ 0.31
PDGFBP01127 AL023806.1-201ENST00000603994 1649 ntBASIC17■□□□□ 0.31
PDGFBP01127 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
PDGFBP01127 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PDGFBP01127 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17■□□□□ 0.31
PDGFBP01127 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PDGFBP01127 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17■□□□□ 0.31
PDGFBP01127 HAUS4P1-201ENST00000406739 1145 ntBASIC17■□□□□ 0.31
PDGFBP01127 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17■□□□□ 0.31
PDGFBP01127 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PDGFBP01127 BNIP3P42-201ENST00000454982 569 ntBASIC17■□□□□ 0.31
PDGFBP01127 DOC2GP-202ENST00000514950 1163 ntBASIC17■□□□□ 0.31
PDGFBP01127 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC17■□□□□ 0.31
PDGFBP01127 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC17■□□□□ 0.31
PDGFBP01127 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC17■□□□□ 0.31
PDGFBP01127 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC17■□□□□ 0.31
PDGFBP01127 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PDGFBP01127 BNIP3P29-201ENST00000598302 571 ntBASIC17■□□□□ 0.31
PDGFBP01127 TMEM261P1-201ENST00000604899 340 ntBASIC17■□□□□ 0.31
PDGFBP01127 AC099568.2-201ENST00000609194 695 ntBASIC17■□□□□ 0.31
PDGFBP01127 AC011447.5-201ENST00000616168 564 ntBASIC17■□□□□ 0.31
PDGFBP01127 AL109936.8-201ENST00000641772 604 ntBASIC17■□□□□ 0.31
PDGFBP01127 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PDGFBP01127 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC17■□□□□ 0.31
PDGFBP01127 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PDGFBP01127 CFAP77-201ENST00000343036 1818 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.31
PDGFBP01127 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PDGFBP01127 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC17■□□□□ 0.31
PDGFBP01127 FOXO1B-201ENST00000504678 1527 ntBASIC17■□□□□ 0.31
PDGFBP01127 AL035456.1-201ENST00000456064 1369 ntBASIC17■□□□□ 0.31
PDGFBP01127 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDGFBP01127 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.99■□□□□ 0.31
PDGFBP01127 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
PDGFBP01127 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PDGFBP01127 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDGFBP01127 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.99■□□□□ 0.31
PDGFBP01127 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDGFBP01127 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDGFBP01127 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PDGFBP01127 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC16.99■□□□□ 0.31
PDGFBP01127 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PDGFBP01127 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
PDGFBP01127 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.99■□□□□ 0.31
PDGFBP01127 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
PDGFBP01127 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
PDGFBP01127 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.99■□□□□ 0.31
PDGFBP01127 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
PDGFBP01127 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms