Protein–RNA interactions for Protein: O00635

TRIM38, E3 ubiquitin-protein ligase TRIM38, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM38O00635 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC17.26■□□□□ 0.35
TRIM38O00635 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.26■□□□□ 0.35
TRIM38O00635 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM38O00635 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
TRIM38O00635 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.26■□□□□ 0.35
TRIM38O00635 AC133963.1-201ENST00000504166 1679 ntBASIC17.26■□□□□ 0.35
TRIM38O00635 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
TRIM38O00635 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
TRIM38O00635 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM38O00635 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM38O00635 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC17.25■□□□□ 0.35
TRIM38O00635 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM38O00635 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM38O00635 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM38O00635 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.25■□□□□ 0.35
TRIM38O00635 CRCP-205ENST00000431089 942 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM38O00635 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.25■□□□□ 0.35
TRIM38O00635 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC17.25■□□□□ 0.35
TRIM38O00635 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM38O00635 AC012645.3-201ENST00000568506 470 ntTSL 3 BASIC17.25■□□□□ 0.35
TRIM38O00635 MIR3687-2-201ENST00000577708 61 ntBASIC17.25■□□□□ 0.35
TRIM38O00635 MIR3687-1-201ENST00000614492 61 ntBASIC17.25■□□□□ 0.35
TRIM38O00635 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
TRIM38O00635 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.25■□□□□ 0.35
TRIM38O00635 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM38O00635 CEACAM16-202ENST00000587331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM38O00635 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
TRIM38O00635 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC17.25■□□□□ 0.35
TRIM38O00635 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
TRIM38O00635 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
TRIM38O00635 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC17.24■□□□□ 0.35
TRIM38O00635 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.24■□□□□ 0.35
TRIM38O00635 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.24■□□□□ 0.35
TRIM38O00635 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.24■□□□□ 0.35
TRIM38O00635 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 AC073621.1-201ENST00000392730 636 ntBASIC17.24■□□□□ 0.35
TRIM38O00635 SPDYE21P-201ENST00000413323 827 ntBASIC17.24■□□□□ 0.35
TRIM38O00635 AC023274.1-201ENST00000418278 595 ntBASIC17.24■□□□□ 0.35
TRIM38O00635 RPS8P6-201ENST00000426177 609 ntBASIC17.24■□□□□ 0.35
TRIM38O00635 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.24■□□□□ 0.35
TRIM38O00635 PRYP5-201ENST00000451909 266 ntBASIC17.24■□□□□ 0.35
TRIM38O00635 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.24■□□□□ 0.35
TRIM38O00635 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.24■□□□□ 0.35
TRIM38O00635 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM38O00635 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.24■□□□□ 0.35
TRIM38O00635 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC17.24■□□□□ 0.35
TRIM38O00635 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
TRIM38O00635 MIR1199-201ENST00000621445 119 ntBASIC17.24■□□□□ 0.35
TRIM38O00635 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC17.24■□□□□ 0.35
TRIM38O00635 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
TRIM38O00635 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
TRIM38O00635 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
TRIM38O00635 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM38O00635 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 TRAM1-205ENST00000521425 3394 ntTSL 2 BASIC17.23■□□□□ 0.35
TRIM38O00635 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
TRIM38O00635 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms