Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 NTRK2-206ENST00000376213 5560 ntAPPRIS ALT1 TSL 5 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 TSPY19P-201ENST00000418461 509 ntBASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 TSPY18P-201ENST00000441642 509 ntBASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VPS9D1Q9Y2B5 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 SCARNA2-201ENST00000458748 420 ntBASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 AL732292.2-201ENST00000609649 430 ntBASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 AC004817.3-201ENST00000602957 2129 ntBASIC17.05■□□□□ 0.32
VPS9D1Q9Y2B5 AC009053.2-201ENST00000563701 2365 ntBASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 LSM5-204ENST00000409909 740 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 MSRA-206ENST00000521209 814 ntTSL 3 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 MTDHP3-201ENST00000594186 672 ntBASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 AL589182.2-201ENST00000619332 1049 ntBASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 AL355877.3-201ENST00000622820 899 ntBASIC17.04■□□□□ 0.32
VPS9D1Q9Y2B5 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms